Uses of Interface
pal.treesearch.ConstraintModel

Packages that use ConstraintModel

pal.mep	Classes for the analysis of "measurably evolving populations" (mep).
pal.treesearch

Uses of ConstraintModel in pal.mep

Methods in pal.mep that return ConstraintModel

ConstraintModel	DeltaModel.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
ConstraintModel	MutationRateModel.Factory.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)

Uses of ConstraintModel in pal.treesearch

Classes in pal.treesearch that implement ConstraintModel

class	FixedBSRDTGlobalClockModel
class	FixedSRDTGlobalClockModel
class	GlobalClockModel
class	MRDTGlobalClockModel
class	SRDTGlobalClockModel
class	UnconstrainedModel

Methods in pal.treesearch with parameters of type ConstraintModel

GeneralConstraintGroupManager

GeneralConstraintGroupManager.Store.getConstraintGroupManager(java.lang.String[] leafLabelSet, ConstraintModel constraints)

Constructors in pal.treesearch with parameters of type ConstraintModel

GeneralConstructionTool(ConstraintModel constraints, Alignment alignment)
The constructor

GeneralLikelihoodSearcher(Node baseTopology, Alignment baseAlignment, ConstraintModel constraintModel)