pal.treesearch
Class SearcherUtils

java.lang.Object
  pal.treesearch.SearcherUtils

public class SearcherUtils
extends java.lang.Object

Constructor Summary

SearcherUtils()

Method Summary

static int	createMatchups(int numberOfSites, int numberOfStates, int[] sitePatternMatchup, int[] patternStateMatchup, int[] sequence) Fill in matchup arrays
static java.lang.String[][]	split(java.lang.String[] leafNames, MersenneTwisterFast r)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SearcherUtils

public SearcherUtils()

Method Detail

createMatchups

public static final int createMatchups(int numberOfSites,
                                       int numberOfStates,
                                       int[] sitePatternMatchup,
                                       int[] patternStateMatchup,
                                       int[] sequence)

Fill in matchup arrays

Parameters:

numberOfSites - The number of sites

numberOfStates - The number of states

sitePatternMatchup - Should be of length numberOfSites

patternStateMatchup - Should be of length numberOfStates+1

sequence - the sequence

Returns:

the number of patterns

split

public static final java.lang.String[][] split(java.lang.String[] leafNames,
                                               MersenneTwisterFast r)