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| Packages that use TreeGenerator | |
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| pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
| Uses of TreeGenerator in pal.tree |
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| Subinterfaces of TreeGenerator in pal.tree | |
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interface |
TreeIterator
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| Methods in pal.tree that return TreeGenerator | |
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static TreeGenerator |
TreeGenerator.Utils.createNeighbourJoiningGenerator(DistanceMatrixGenerator dataGenerator,
java.lang.String[] outgroupNames)
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| Methods in pal.tree with parameters of type TreeGenerator | |
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static Tree |
TreeUtils.getReplicateCladeSupport(java.lang.String attributeName,
Tree baseTree,
TreeGenerator treeGenerator,
int numberOfReplicates,
AlgorithmCallback callback)
Generates a tree which is identical to baseTree but has attributes (defined by attributeName) at all internal nodes excluding the root node signifying (as a value between 0 and 100) the replicate support by clade (that is the proportion of replicates that produce the sub clade under that node) |
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