Uses of Class
pal.tree.SimulatedAlignment

Packages that use SimulatedAlignment

pal.tree

Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).

Uses of SimulatedAlignment in pal.tree

Methods in pal.tree that return SimulatedAlignment

SimulatedAlignment	SimulatedAlignment.Factory.generateAlignment(Tree tree) Generate a simulated alignment based on input tree
SimulatedAlignment[]	SimulatedAlignment.Factory.generateAlignments(Tree[] trees, AlgorithmCallback callback) Generate an array of simulated alignments based on an array of input trees