Uses of Class
pal.tree.SimpleTree

Packages that use SimpleTree

pal.supgma
pal.tree	Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).

Uses of SimpleTree in pal.supgma

Subclasses of SimpleTree in pal.supgma

class

SUPGMATree constructs an SUPGMA tree from pairwise distances.

Uses of SimpleTree in pal.tree

Subclasses of SimpleTree in pal.tree

class	ClusterTree
class	NeighborJoiningTree constructs a neighbor-joining tree from pairwise distances Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees.
class	ReadTree constructs a tree reading in a New Hampshire treefile, taking care for internal labels and branch lengths and binary/nonbinary and rooted/unrooted trees
class	UPGMATree Deprecated. Use ClusterTree