pal.tree
Class UPGMATree

java.lang.Object
  pal.tree.SimpleTree
      pal.tree.UPGMATree

All Implemented Interfaces:

java.io.Serializable, IdGroup, Report, Units, UnitsProvider, Tree

Deprecated. Use ClusterTree

public class UPGMATree
extends SimpleTree

constructs a UPGMA tree from pairwise distances

Version:

$Id: UPGMATree.java,v 1.10 2002/12/05 04:27:28 matt Exp $

Author:

Korbinian Strimmer, Alexei Drummond

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface pal.tree.Tree

Tree.TreeBase

Nested classes/interfaces inherited from interface pal.misc.IdGroup

IdGroup.Utils

Field Summary

Fields inherited from interface pal.misc.Units

DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS

Constructor Summary

UPGMATree(DistanceMatrix m)
Deprecated. constructor UPGMA tree

Method Summary

Methods inherited from class pal.tree.SimpleTree

createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

UPGMATree

public UPGMATree(DistanceMatrix m)

Deprecated.

constructor UPGMA tree

Parameters:

m - distance matrix