pal.tree
Interface ParameterizedTree

All Superinterfaces:

IdGroup, Parameterized, java.io.Serializable, Tree, Units, UnitsProvider

All Known Implementing Classes:

ClockTree, DemographicClockTree, LogParameterizedTree, MutationRateModelTree, UnconstrainedTree

public interface ParameterizedTree
extends Parameterized, Tree

abstract base class for a tree with an Parameterized interface

Version:

$Id: ParameterizedTree.java,v 1.21 2003/06/04 03:17:52 matt Exp $

Author:

Alexei Drummond, Korbinian Strimmer, Matthew Goode

Nested Class Summary

static interface	ParameterizedTree.Factory Factory interface
static class	ParameterizedTree.ParameterizedTreeBase For parameterisations that work by adjusting a base tree (that is, they aren't really tree's themselves...)

Nested classes/interfaces inherited from interface pal.misc.Parameterized

Parameterized.Null, Parameterized.ParameterizedBase, Parameterized.ParameterizedUser, Parameterized.Utils

Nested classes/interfaces inherited from interface pal.tree.Tree

Tree.TreeBase

Field Summary

Fields inherited from interface pal.misc.Units

DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS

Method Summary

OrthogonalHints	getOrthogonalHints()
java.lang.String	getParameterizationInfo()

Methods inherited from interface pal.misc.Parameterized

getDefaultValue, getLowerLimit, getNumParameters, getParameter, getUpperLimit, setParameter, setParameterSE

Methods inherited from interface pal.tree.Tree

createNodeList, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getInternalNode, getInternalNodeCount, getRoot, getUnits, setAttribute, setRoot

Methods inherited from interface pal.misc.IdGroup

getIdCount, getIdentifier, setIdentifier, whichIdNumber

Method Detail

getOrthogonalHints

OrthogonalHints getOrthogonalHints()

getParameterizationInfo

java.lang.String getParameterizationInfo()