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| Interface Summary | |
|---|---|
| RateHandler | |
| SUPGMABase.CISummary | |
| SUPGMABase.PopulationParameters | |
| ThetaHandler | |
| Class Summary | |
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| RateHandler.Utils | |
| SUPGMABase | |
| SUPGMADistanceMatrix | Corrects distances in a distance matrix such that all tips appear contemporaneous, given a time/date and rate information for the taxa. |
| SUPGMATree | constructs an SUPGMA tree from pairwise distances. |
| ThetaHandler.Utils | |
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