pal.substmodel
Class RateMatrixUtils

java.lang.Object
  pal.substmodel.RateMatrixUtils

public class RateMatrixUtils
extends java.lang.Object

Version:

$Id: RateMatrixUtils.java,v 1.2 2001/07/13 14:39:13 korbinian Exp $

Author:

Korbinian Strimmer, Alexei Drummond, Matthew Goode

Constructor Summary

RateMatrixUtils()

Method Summary

static RateMatrix[]	getCopy(RateMatrix[] toCopy)
static RateMatrix	getInstance(int typeID, int modelID, double[] params, double[] freq) Create rate matrix given model and data type codes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RateMatrixUtils

public RateMatrixUtils()

Method Detail

getInstance

public static RateMatrix getInstance(int typeID,
                                     int modelID,
                                     double[] params,
                                     double[] freq)

Create rate matrix given model and data type codes

Parameters:

typeID - code for data type

modelID - code for model of substitution

params - model parameters

freq - model frequencies

Returns:

rate matrix

getCopy

public static final RateMatrix[] getCopy(RateMatrix[] toCopy)