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See:
Description
| Interface Summary | |
|---|---|
| LikelihoodEvaluator | |
| LikelihoodEvaluator.MLResult | |
| ReplicateLikelihoodEvaluator | |
| TopologyTestEngine.StatisticsHandler | |
| TopologyTestEngine.TestResult | |
| TopologyTestEngine.TopologyPool | |
| Class Summary | |
|---|---|
| BootstrapStatistics | computation of bootstrap estimators (BIAS, SD, VAR, CI) given a statistic theta and corresponding bootstrap replicates. |
| ChiSquareDistribution | chi-square distribution (distribution of sum of squares of n uniform random variables) (Parameter: n; mean: n; variance: 2*n) The chi-square distribution is a special case of the Gamma distribution (shape parameter = n/2.0, scale = 2.0). |
| ChiSquareTest | chi-square test |
| ContigencyTable | Class for permuting contigency tables and determining the likelihood of the table. |
| DiscreteStatistics | simple discrete statistics (mean, variance, cumulative probability, quantiles etc.) |
| ExponentialDistribution | exponential distribution. |
| FisherExact | This does a one tail fisher exact test. |
| GammaDistribution | gamma distribution. |
| GeneralTopologyPool | |
| KishinoHasegawaTest | Kishino-Hasegawa-(Templeton)-Test (1989, 1983) to compare a set of evolutionary hypotheses |
| LikelihoodEvaluator.SimpleMLResult | |
| LikelihoodEvaluator.Utils | |
| LikelihoodRatioTest | Likelihood ratio test based on chi-square statistics |
| ModelSupport | Computes Akaike weights and expected Akaike weights (relative evidence, expected relative evidence) for a set of models and computes corresponding confidence sets |
| NormalDistribution | normal distribution (pdf, cdf, quantile) |
| ParetoDistribution | Pareto distribution (scale-free distribution without characteristic length scale). |
| PenalizedLikelihood | Penalized likelihood criteria |
| RELLTopologyPool | |
| ReplicateLikelihoodEvaluator.Utils | |
| ShimodairaHasegawaStatistics | Title: ShimodairaHasegawaStatistics |
| ShimodairaHasegawaTest | Shimodaira-Hasegawa-Test (1999) to compare a set of evolutionary hypotheses |
| TopologyTestEngine | |
Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)
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