pal.statistics
Interface TopologyTestEngine.StatisticsHandler

All Known Implementing Classes:

ShimodairaHasegawaStatistics

Enclosing class:

TopologyTestEngine

public static interface TopologyTestEngine.StatisticsHandler

Method Summary

double[]	getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods, int numberOfTopologies)
double[]	getPValues(double[] originalOptimisedLogLikelihoods, double[][] replicateLogLikelihoods, int numberOfReplicates, int numberOfTopologies)

Method Detail

getOriginalTestStatistics

double[] getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods,
                                   int numberOfTopologies)

getPValues

double[] getPValues(double[] originalOptimisedLogLikelihoods,
                    double[][] replicateLogLikelihoods,
                    int numberOfReplicates,
                    int numberOfTopologies)

Parameters:

originalOptimisedLogLikelihoods - stored as [topology]

replicateLogLikelihoods - store as [replicate][topology]

numberOfTopologies - the number of topologies

numberOfTopologies - the number of replicates

Returns: