Uses of Class
pal.misc.LabelMapping

Packages that use LabelMapping

pal.alignment	Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating.
pal.gui	GUI components for some special objects (e.g., trees).
pal.misc	Classes that don't fit elsewhere ;^)
pal.tree	Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).

Uses of LabelMapping in pal.alignment

Constructors in pal.alignment with parameters of type LabelMapping

SimpleAlignment(Alignment a, LabelMapping lm)
Clone constructor.

Uses of LabelMapping in pal.gui

Methods in pal.gui with parameters of type LabelMapping

void	TreePainter.setLabelMapping(LabelMapping lp)
void	TreeComponent.setLabelMapping(LabelMapping lm)

Uses of LabelMapping in pal.misc

Methods in pal.misc that return LabelMapping

LabelMapping	LabelMapping.getRelabeled(LabelMapping.Relabeller relabeller)
LabelMapping	LabelMapping.getUniquifiedMappings() If a mapping occurs more than once will rename instance to "x 1", "x 2"...

Uses of LabelMapping in pal.tree

Methods in pal.tree with parameters of type LabelMapping

protected void

SimpleNode.init(Node n, boolean keepId, LabelMapping lm) Initialized node instance variables based on given Node.

Constructors in pal.tree with parameters of type LabelMapping

SimpleNode(Node n, LabelMapping lm)

SimpleTree(Tree tree, LabelMapping lm)
clone constructor