Uses of Interface
pal.eval.UnconstrainedLikelihoodModel.Leaf

Packages that use UnconstrainedLikelihoodModel.Leaf

pal.eval	Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.
pal.treesearch

Uses of UnconstrainedLikelihoodModel.Leaf in pal.eval

Classes in pal.eval that implement UnconstrainedLikelihoodModel.Leaf

static class

SimpleUnconstrainedLikelihoodModel.LeafImpl

Methods in pal.eval that return UnconstrainedLikelihoodModel.Leaf

UnconstrainedLikelihoodModel.Leaf	UnconstrainedLikelihoodModel.Instance.createNewLeaf(int[] patternStateMatchup, int numberOfPatterns) Create anew leaf calculator
UnconstrainedLikelihoodModel.Leaf	SimpleUnconstrainedLikelihoodModel.LeafImpl.getCopy()
UnconstrainedLikelihoodModel.Leaf	UnconstrainedLikelihoodModel.Leaf.getCopy() Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)

Uses of UnconstrainedLikelihoodModel.Leaf in pal.treesearch

Methods in pal.treesearch that return UnconstrainedLikelihoodModel.Leaf

UnconstrainedLikelihoodModel.Leaf	MRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf	ConstraintModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf	SRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf	FixedBSRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf	FixedSRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf	GlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf	UnconstrainedModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
protected UnconstrainedLikelihoodModel.Leaf	AbstractLeafNode.createNewFreeLeafCalculator(GeneralConstructionTool tool)
UnconstrainedLikelihoodModel.Leaf	GeneralConstructionTool.createNewFreeLeafCalculator(int[] patternStateMatchup, int numberOfPatterns)