pal.eval
Interface SiteDetails

public interface SiteDetails

Nested Class Summary

static class

SiteDetails.Utils

Method Summary

SubstitutionModel	getRelatedModel()
double[]	getSiteLikelihoods() Get the likelihoods for each site (not the log likelihoods)
double[]	getSiteLogLikelihoods() Get the likelihoods for each site (logged)
double[]	getSitePosteriors(int site)

Method Detail

getRelatedModel

SubstitutionModel getRelatedModel()

getSitePosteriors

double[] getSitePosteriors(int site)

getSiteLikelihoods

double[] getSiteLikelihoods()

Get the likelihoods for each site (not the log likelihoods)

Returns:

a double array of likelihoods matching each site

getSiteLogLikelihoods

double[] getSiteLogLikelihoods()

Get the likelihoods for each site (logged)

Returns:

a double array of log likelihoods matching each site