pal.eval
Class SimpleUnconstrainedLikelihoodModel

java.lang.Object
  pal.eval.SimpleUnconstrainedLikelihoodModel

All Implemented Interfaces:

UnconstrainedLikelihoodModel

public class SimpleUnconstrainedLikelihoodModel
extends java.lang.Object
implements UnconstrainedLikelihoodModel

Nested Class Summary

static class	SimpleUnconstrainedLikelihoodModel.InternalImpl
static class	SimpleUnconstrainedLikelihoodModel.LeafImpl

Nested classes/interfaces inherited from interface pal.eval.UnconstrainedLikelihoodModel

UnconstrainedLikelihoodModel.External, UnconstrainedLikelihoodModel.Instance, UnconstrainedLikelihoodModel.Internal, UnconstrainedLikelihoodModel.Leaf

Constructor Summary

SimpleUnconstrainedLikelihoodModel()

Method Summary

static UnconstrainedLikelihoodModel.Instance	createInstance(LHCalculator.Factory base, SubstitutionModel model) Create a SimpleUnconstrainedLikelihoodModel instance
static UnconstrainedLikelihoodModel.Instance	createInstance(LHCalculator.Generator base, SubstitutionModel model) Create a SimpleUnconstrainedLikelihoodModel instance

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleUnconstrainedLikelihoodModel

public SimpleUnconstrainedLikelihoodModel()

Method Detail

createInstance

public static final UnconstrainedLikelihoodModel.Instance createInstance(LHCalculator.Generator base,
                                                                         SubstitutionModel model)

Create a SimpleUnconstrainedLikelihoodModel instance

Parameters:

base - The base LHCalculator generator to utilise

model - The substitution model

Returns:

An appropriate UnconstrianedLikelihoodModel instance

createInstance

public static final UnconstrainedLikelihoodModel.Instance createInstance(LHCalculator.Factory base,
                                                                         SubstitutionModel model)

Create a SimpleUnconstrainedLikelihoodModel instance

Parameters:

base - The base LHCalculator generator to utilise

model - The substitution model

Returns:

An appropriate UnconstrianedLikelihoodModel instance