Uses of Interface
pal.distance.DistanceMatrixAccess

Packages that use DistanceMatrixAccess

pal.distance	Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).
pal.supgma

Uses of DistanceMatrixAccess in pal.distance

Methods in pal.distance that return DistanceMatrixAccess

static DistanceMatrixAccess	DistanceMatrixAccess.Utils.createEvolutionary(Alignment a, SubstitutionModel sm)
static DistanceMatrixAccess	DistanceMatrixAccess.Utils.createSimple(DistanceMatrix base)

Uses of DistanceMatrixAccess in pal.supgma

Methods in pal.supgma with parameters of type DistanceMatrixAccess

SUPGMABase.PopulationParameters

SUPGMABase.process(DistanceMatrixAccess alternativeSource, AlgorithmCallback callback, LMSSolver solver)

Constructors in pal.supgma with parameters of type DistanceMatrixAccess

SUPGMABase(DistanceMatrixAccess distanceAccess, DistanceMatrixGenerator replicateGenerator, TimeOrderCharacterData tocd)