pal.datatype
Interface TransitionPenaltyTable

All Known Implementing Classes:

IUPACPenaltyTable

public interface TransitionPenaltyTable

Implements a table of transition penalties for a particular datatype. Used for alignment scoring.

Version:

$Id: TransitionPenaltyTable.java,v 1.2 2001/07/13 14:39:13 korbinian Exp $

Author:

Alexei Drummond

Method Summary

DataType	getDataType()
double	penalty(int a, int b)

Method Detail

penalty

double penalty(int a,
               int b)

getDataType

DataType getDataType()