pal.coalescent
Class CoalescentSimulator

java.lang.Object
  pal.coalescent.CoalescentSimulator

public class CoalescentSimulator
extends java.lang.Object

Simulates a set of coalescent intervals given a demographic model.

Version:

$Id: CoalescentSimulator.java,v 1.5 2001/07/12 12:17:43 korbinian Exp $

Author:

Alexei Drummond, Korbinian Strimmer

Constructor Summary

CoalescentSimulator()

Method Summary

CoalescentIntervals

simulateIntervals(int numLines, DemographicModel model) Simulates a set of CoalescentIntervals from a genealogy assuming contemporaneous tips.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CoalescentSimulator

public CoalescentSimulator()

Method Detail

simulateIntervals

public CoalescentIntervals simulateIntervals(int numLines,
                                             DemographicModel model)

Simulates a set of CoalescentIntervals from a genealogy assuming contemporaneous tips.

Parameters:

numLines - the number of tips in the sample genealogy

model - the demographic model to use