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Uses of Class
pal.alignment.SimpleAlignment

Packages that use SimpleAlignment
pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. 
 

Uses of SimpleAlignment in pal.alignment
 

Subclasses of SimpleAlignment in pal.alignment
 class MultiLocusAnnotatedAlignment
          MultiLocusAnnotatedAlignment is an extension of the SimpleAlignment that includes Annotation, and is designed for multiple loci.
 class SimpleAnnotatedAlignment
          This is the basic implementation of the Annotation interface, which is designed to provide annotation for an alignment.
 

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