Uses of Interface
pal.alignment.AlignmentGenerator

Packages that use AlignmentGenerator

pal.alignment	Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating.
pal.statistics	Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)

Uses of AlignmentGenerator in pal.alignment

Methods in pal.alignment that return AlignmentGenerator

static AlignmentGenerator

AlignmentGenerator.Utils.createBootstrapGenerator(Alignment baseAlignment)

Uses of AlignmentGenerator in pal.statistics

Constructors in pal.statistics with parameters of type AlignmentGenerator

GeneralTopologyPool(Tree[] topologies, LikelihoodEvaluator baseCalculator, ReplicateLikelihoodEvaluator replicateCalculator, Alignment baseAlignment, AlignmentGenerator replicateGenerator)