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		    Follow these citation guidelines when 
		    using applications from the Genome Browser tool suite or 
		    data from the UCSC Genome Browser database in a research
		    work that will be published in a journal or on the 
		    Internet.  In addition to the relevant 
		    paper, please include a reference to the Genome Browser 
		    website in your manuscript: http://genome.ucsc.edu/. Be sure to 
		    mention the release date of the genome assembly used in 
		    your work to faciliate the examination of your data by 
		    reviewers and the readers. Please do not include
		    references to our development servers (such as
		    genome-test.cse.ucsc.edu) in published links or URLs. 
		    For an extended list of publications produced by the UCSC 
		    Genome Bioinformatics group, see our 
		    Publications page. 
		     UCSC Genome Browser:
 
		    Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler 
		    AM, Haussler D.  
		    The human genome browser at UCSC. 
		    Genome Res. 2002 Jun;12(6):996-1006.  
		     UCSC Genome Browser database/data:
 
                    Fujita PA, Rhead B, Zweig AS, Hinrichs AS, Karolchik D, Cline MS, Goldman M, 
                    Barber GP, Clawson H, Coelho A, Diekhans M, Dreszer TR, Giardine BM, Harte RA, 
                    Hillman-Jackson J, Hsu F, Kirkup V, Kuhn RM, Learned K, Li CH, Meyer LR, Pohl A, 
                    Raney BJ, Rosenbloom KR, Smith KE, Haussler D, Kent WJ.
                    The UCSC Genome Browser database: update 2011.
                    Nucleic Acids Res. 2010 Oct 18. [Epub ahead of print] 
		    Cite this 
		    paper for annotation data extracted from the Genome 
		    Browser database. Annotation tracks should also be 
		    credited according to their source, which can be found 
		    on the track's description page or on the Genome Browser 
		    Credits page.  
		     UCSC ENCODE Browser/database:
 
		    Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer
		    LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS,
		    Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM,
		    Karolchik D, Haussler D, Kent WJ.
		    ENCODE whole-genome data in the UCSC Genome Browser.
		    Nucleic Acids Res. 2010 Jan;38(Database issue):D620-5.
		    Epub 2009 Nov 17. 
		     BLAT alignment tool:
 
		    Kent WJ. 
		    BLAT - the BLAST-like alignment tool. 
		    Genome Res. 2002 Apr;12(4):656-64.
		     
		     UCSC Table Browser:
 
		    Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, 
		    Haussler D, Kent WJ. 
		    The UCSC Table Browser data retrieval 
		    tool. 
		    Nucleic Acids Res. 2004 Jan 1;32(Database 
		    issue):D493-6.
		     
		     UCSC Proteome Browser:
 
		    Hsu F, Pringle TH, Kuhn RM, Karolchik D, Diekhans M, 
		    Haussler D, Kent WJ.
		    The UCSC Proteome Browser. 
		    Nucleic Acids Res. 2005 Jan 1;33(Database 
		    issue):D454-8.
		     
		     Human genome assembly:
 
		    Work pertaining to the human genome assembly should cite 
		    the Human Genome Consortium paper:
		    The Genome Sequencing Consortium. 
		    Initial sequencing and analysis of the human 
		    genome. 
		    Nature. 2001 Feb 15;409(6822):860-921.
		     
		    When publishing results pertaining to human genome 
		    assemblies prior to the 22 Dec., 2001 assembly, also cite 
		    the GigAssembler: 
		    Kent WJ, Haussler D. 
		    Assembly of the working draft of the human 
		    genome with gigAssembler. 
		    Genome Res. 2001 Sep;11(9)1541-1548.
		     
		     Other genome assemblies:
 Manuscripts that include 
		    the use of Genome Browser assembly data from organisms 
		    other than H. sapiens should cite the relevant 
		    initial sequencing paper. Most of these references can be 
		    found on our 
		    Publications web page. 
		     
		     Screen shots:
 
		    Journal-quality screen shots of the 
		    Genome Browser can be produced by using the PDF/PS 
		    utility accessed via the top menu bar link on the tracks 
		    display page. When including a screen shot in your 
		    manuscript, reference 
		    http://genome.ucsc.edu in the caption and cite 
		    the Genome Browser paper in the manuscript. Don't forget 
		    to mention the genome assembly used to produce the image.
		    When including a Genome Browser URL, please remove the
		    hgsid parameter. It is an internally-used
		    parameter that expires after about a day.
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