This page lists releases of 
                ENCODE data submitted to the UCSC Genome Browser for data storage 
                and display during the pilot phase of ENCODE (2003 - 2007). 
                Most of these datasets
                were restricted to the defined ENCODE regions.
              
              
                | Data | Date | Cell Lines | 
                  
                    | Affy EC RNA (chr21 and chr22) | 16 Apr 2008 | 16 cell lines | 
                    
                    | Harvard SCONE Cons (update) | 19 Oct 2007 |  | 
                  
                    | BU Orchid (update) | 12 Oct 2007 |  | 
                    
                    | ENCODE hg18 Data Migration and Browser | 8 Oct 2007 |  | 
                  
                  
                    | GIS RNA and ChIP-PET (3 new datasets) | 28 Sept 2007 | ES cells | 
                
                    | UC Davis ChIP-chip - Mar07 Batch | 24 July 2007 | HeLa, GM06990 | 
                  
                    | Yale ChIP-chip - Jun07 Batch | 13 Jul 2007 | HeLa | 
                  
                    | Yale ChIP-chip - Apr07 Batch | 13 Jul 2007 | HeLa | 
                  
                    | Yale ChIP-chip - Jan07 Batch | 13 Jul 2007 | HeLa, K562 | 
                  
                    | Yale ChIP-chip - Nov06 Batch | 13 Jul 2007 | HeLa, GM06990 | 
                  
                    | Univ. Virginia - Replication Origins (new methods) | 30 May 2007 | HeLa, GM06990 | 
                  
                    | Duke DnaseI HS Feb07 Batch | 21 May 2007 | IMR90, K562, H9 | 
                
                    | Gencode Genes Mar07 Batch, Gencode RACEfrags | 18 May 2007 |  | 
                  
                    | Gencode RACE Frags | 18 May 2007 |  | 
                  
                    | UC Davis ChIP Hits (E2F1 and c-Myc Peaks update) | 17 Apr 2007 | HeLa | 
                  
                    | Univ. Virginia DNA Replication Temporal Segmentation (Data correction) | 17 Apr 2007 | HeLa | 
                  
                    | Sanger ChIP-chip (update, CTCF and 4 histone mods) | 21 Feb 2007 | GM06990 | 
                
                    | Yale ChIP-chip RFBR | 21 Feb 2007 |  | 
                  
                    | University of Vienna RNA secondary structure predicted by RNAz | 13 Feb 2007 |  | 
                  
                    | UW/Regulome QCP Dnase HS (update and new cell lines) | 7 Dec 2006 | HeLa, GM06990, CD4, K562, HepG2 and 11 others | 
                  
                    | Duke/NHGRI DNaseI HS (New Chip method) | 5 Dec 2006 | CD4, GM06990, HeLaS3, HepG2 | 
                  
                    | UT-Austin STAGE (STAT1) | 29 Nov 2006 | HeLa S3 | 
                  
                    | Genome Inst. Singapore ChIP/PET (cMyc) | 7 Nov 2006 | P493 B cells | 
                  
                    | TBA Alignments, Conservation, Elements | 5 Oct 2006 |  | 
                  
                    | MLAGAN Alignments, Conservation, Elements | 5 Oct 2006 |  | 
                  
                    | MAVID Alignments, Conservation, Elements | 5 Oct 2006 |  | 
                  
                    | UCB Alignment Agreement | 5 Oct 2006 |  | 
                  
                    | Conserved Elements (Sep05 MSA freeze) | 5 Oct 2006 |  | 
                  
                    | U North Carolina FAIRE (correction of Peaks data) | 21 Aug 2006 | 2091 fibroblasts | 
                  
                    | Sanger Chip/Chip in MOLT4 and PTR8 cells | 18 Aug 2006 | HLF-1 | 
                  
                    | University of Uppsala Chip/chip (H3Ac, H4Ac, butyrate treatment) | 26 June 2006 | HepG2 | 
                  
                    | U North Carolina FAIRE (update of Peaks data) | 15 June 2006 | 2091 fibroblasts | 
                  
                  | UW/Regulome Dnase/Array | 13 June 2006 | GM06990 | 
                  
                    | Sanger Chip/Chip in HLF-1 cells | 24 May 2006 | HLF-1 | 
                  
                    | DLESS (Detection of LinEage Specific Selection) | 19 May 2006 |  | 
                  
                    | Yale ChIP-chip (5 new TFs) | 13 Jan 2006 | HeLa | 
                  
                    | Yale RNA (update) | 2 Jan 2006 |  | 
                  
                    | University of Uppsala Chip/chip (data correction) | 3 Jan 2006 |  | 
                  
                    | UT-Austin STAGE | 28 Dec 2005 | HeLa | 
                  
                    | U Virginia DNA Replication Timing and Predicted Origins | 29 Dec 2004 | HeLa | 
                  
                    | Affy RNA and Transfrags (HeLa update) | 21 Dec 2005 | HeLa | 
                  
                    | Sanger ChIP-chip (5 histone mods) | 22 Nov 2005 | HeLa, GM06990, K562 | 
                  
                    | U North Carolina FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements | 18 Nov 2005 | 2091 fibroblasts | 
                  
                    | UC Davis ChIP-chip (Pol2, Myc) | 19 Nov 2005 | HeLa | 
                  
                    | Affy ChIP-chip (updates and 3 new TFs) | 18 Nov 2005 | HL-60 | 
                  
                    | Affy RNA and Transfrags (update) | 1 Nov 2005 | HL-60, HeLa, GM06990 | 
                  
                    | UT-Austin Ng ChIP-chip (E2F4, c-Myc factors) | 1 Nov 2005 | HeLa, 2091 fibroblasts | 
                  
                    | GIS PET RNA (update) | 1 Nov 2005 | MCF7 (untreated, and w/ estrogen), HCT116 | 
                  
                    | Gencode Genes and Introns (update) | 1 Nov 2005 |  | 
                  
                    | NHGRI DNaseI HS (update and new GM06990) | 1 Nov 2005 | CD4, GM06990 | 
                  
                    | UCSD/LI Ng ChIP-chip (update and new TFs) | 27 Oct 2005 | HeLa | 
              
                | GIS ChIP/PET (STAT1) | 14 Oct 2005 | HeLa | 
              
                | Boston University ORChID (update) | 21 Sept 2005 | 
              
                | TBA23 EvoFold RNA Structure Predictions | 15 July 2005 | 
              
                | Regulome DNaseI HS and Sens | 14 July 2005 | 
              
                | Regulome Plate Q/A and Amplicons | 14 July 2005 | 
              
                | MSA Consensus Elements | 14 July 2005 | 
              
                | TBA alignments with Conservation | 14 July 2005 | 
              
                | Stanford MLAGAN Alignments and Conservation | 14 July 2005 | 
              
                | Oxford Recombination | 13 July 2005 | 
              
                | EGASP Genes Full, Partial and Update | 6 July 2005 | 
              
                | Stanford DNA Methylation | 6 July 2005 | 
              
                | Stanford ChIP-chip and RNA | 6 July 2005 | 
              
                | RIKEN FANTOM3 CAGE Tags | 6 July 2005 | 
              
                | EGASP Gene Updates | 5 July 2005 | 
              
                | HapMap SNP's | 5 July 2005 | 
              
                | NHGRI WGS Indels | 1 July 2005 | 
              
                | Sanger Association | 1 July 2005 | 
              
                | Sanger ChIP-chip update | 1 July 2005 | 
              
                | Yale RNA on Nimblegen | 27 June 2005 | 
              
                | Affymetrix ChIP-chip and RNA | 17 June 2005 | 
              
                | Yale ChIP-chip on multiple arrays | 17 June 2005 | 
              
                | Yale RNA on Affy | 17 June 2005 | 
              
                | Gencode Genes and Intron Validation | 14 June 2005 | 
              
                | UC Davis E2F1 ChIP-chip | 14 June 2005 | 
              
                | Boston University ORChID (Hydroxyl Radical Cleavage) | 14 June 2005 | 
              
                | UCSD/Ludwig Institute ChIP-chip on Nimblegen | 13 June 2005 | 
              
                | UCSD/Ludwig Institute ChIP-chip | 13 June 2005 | 
              
                | GIS RNA PET | 10 June 2005 | 
              
                | NHGRI DnaseI HS | 10 June 2005 | 
              
                | Sanger Histone Modification ChIP-chip (update) | 9 June 2005 | 
              
                | Stanford Promoters (update) | 6 June 2005 | 
              
                | University of Virginia DNA Replication Timing (update) | 3 June 2005 | 
              
                | Genome Institute of Singapore P53 TFBS ChIP/PET | 24 May 2005 | 
              
                | Boston University First Exon | 23 May 2005 | 
              
                | UCSD/Ludwig Institute Histone Modification ChIP-chip | 6 May 2005 | 
              
                | Sanger Histone Modification ChIP-chip | 7 Apr 2005 | 
              
                | Affymetrix ChIP-chip and RNA enrichment | 31 Jan 2005 | 
              
                | UCSD/Ludwig Institute ChIP-chip | 5 Nov 2004 | 
              
                | University of Virginia DNA Replication Timing | 3 Nov 2004 | 
              
                | Stanford Promoters | 2 Nov 2004 | 
              
                | NHGRI DNaseI Hypersensitive Sites | 1 Nov 2004 |