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                | | ENCODE pilot phase data contributors | 
 
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		    These researchers received NHGRI funds for the
		    large-scale application of existing technologies
		    to determine functional elements across all
		    ENCODE target regions.
		     
                    
		    Ian Dunham, David Vetrie, and Nigel Carter,
                    The Wellcome Trust Sanger Institute, 
		    Hinxton, U.K.
		            
		    Detecting human functional sequences with microarrays
                    Anindya Dutta, University of Virginia, 
		    Charlottesville
		            
		    Mapping replication elements on human chromosomes
		    Thomas Gingeras,  
		    Affymetrix, Inc., Santa Clara, California
		            
		    Mapping sites of transcription and 
		    regulation
		    Roderic Guigo,  
                    Municipal Institute of Medical Research, 
		    Barcelona, Spain
		            
		    Encyclopedia of genes and gene variants
		    Richard Myers, Stanford University, Palo 
		    Alto, California 
		            
		    The Stanford ENCODE Project
                    Bing Ren,  
                    Ludwig Institute for Cancer Research, 
		    University of California, San Diego
		            
		    Mapping transcriptional regulatory elements in human DNA
                    Michael Snyder,  Yale University, New 
		    Haven, Connecticut
		            
		    Transcription and regulatory elements in ENCODE regions
                    George Stamatoyannopoulos, 
                    University of Washington, Seattle 
		            
		    Identification of functional DNA elements by HSqPCR
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            | 
                | | Groups participating in the ENCODE Technology Development Phase | 
 
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		    These researchers received NHGRI funds to improve or 
		    develop new technologies for finding functional elements in 
		    genomic DNA, and will employ them across all ENCODE target 
		    regions. Groups that are also participating in the ENCODE 
		    Pilot Phase are marked with a star (*).
		     
                    
                    Job Dekker, University of Massachusetts 
		    Medical School, Worcester
		            
		    Structural annotation of the human genome
                    Xiang-Dong Fu, University of California, 
		    San Diego
		            
		    A novel chIP-chip technology for ENCODE
		    Roland Green *,  
                    Nimblegen Systems, Inc., Madison, 
		    Wisconsin
		            
		    Discovery of binding sites for transcription factors
		    Robert Kingston,
		    Massachusetts General Hospital, Boston
		            
		    Long-range, high-resolution mapping of chromatin
		    Mark McCormick,  
                    Nimblegen Systems, Inc., Madison, 
		    Wisconsin
		            
		    DNA array-based exon detection and linkage mapping
 
                    Zhiping Weng *,  Boston University
		            
		    Alternative promoter usage in tissue-specific gene expression
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                    Second round of technology development grantees (September 
		    2004):
		     
                    
                    Joseph Ecker, Salk Institute
		            
                    Genome Wide Analysis of DNA Methylation
                    Vishwanath Iyer, University of Texas, 
		    Austin
		            
                    STAGE and FAIRE for Regulatory Element Identification
                    Madaiah Puttaraju,  
		    Intronn, Inc.
		            
                    Use of RNA trans-splicing to identify splice sites
                    Yijun Ruan,  
                    Genome Institute of Singapore
		            
                    Ditag technologies for complete transcriptome annotation
                    Scott Tenenbaum, SUNY Albany
		            
                    Identifying functional regulatory elements in RNA
                    Tom Tullius, Boston University
		            
                    Structure of genomic DNA at single-nucleotide resolution
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		    These researchers provided infrastructure development 
		    to support ENCODE-related research.
		     
                    
		    Andreas D. Baxevanis,  
		    NHGRI Division of Intramural Research
		            
		    Coordination of the database for other data types
		    Pieter De Jong, Children's Hospital Oakland Research 
		    Institute
		            
                    Clone 
		    resources to support comparative sequencing.
 
                    Eric Green, 
		    NIH Intramural Sequencing Center
		            
		    Comparative sequencing
                    Ross Hardison,  
                    Webb Miller,  
		    Pennsylvania State University
		            
                    Computational tools for comparative genomics; collaboration with UCSC
                    Jim Kent, 
                    David Haussler, Kate Rosenbloom, Daryl Thomas, Ting 
		    Wang, and the  
		    UCSC Genome Bioinformatics staff
		            
		    Coordination of the Genome Browser website and the database 
		    for all sequence-related data
                    Kerstin Lindblad-Toh,  Michele Clamp,
                    Broad 
		    Institute
		            
                    Computational tools for comparative genomics and prediction 
		    of cis-regulatory elements
                    Marco Marra,  
                    British Columbia Cancer Agency Genome Sciences Center
		            
                    Generation of maps and contigs for ENCODE BACs
                    Greg Schuler,  
                    National Center for Biotechnology Information 
		    (NCBI)
		            
                    Coordination of ENCODE data with NCBI
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                    Additional ENCODE pilot phase participants:
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