consNonTx 80% - 100%, gene 50% - 80% (1 manual)
chr8:117800001-118300000	consNonTx 11.4%, gene  3.2%
chr14:96900001-97400000	consNonTx 15.9%, gene  2.9%
chr7:74700001-75200000	consNonTx 11.8%, gene  2.1%
chrX:117500001-118000000	consNonTx 10.7%, gene  2.0%
(chr6:108100001-108600000	consNonTx 18.6%, gene  2.3%)
Here is the noncoding conservation and gene density
of non-overlapping 500 kb regions in the manual
picks.   The boundaries between strata are:
          low 50%  middle 30%  high 20%
         ------------------------------
gene      0.0-1.9%  1.9-4.2%   4.2-100%
consNotTx 0.0-6.3%  6.3-10.6% 10.6-100%
CFTR
    chr7:114288355-114788354 gene  1.6% consNotTx  6.0%
    chr7:114788355-115288354 gene  2.8% consNotTx  9.9%
    chr7:115288355-115788354 gene  3.3% consNotTx  8.5%
    chr7:115788355-116165780 gene  2.5% consNotTx  4.4%
Interleukin_Cluster
    chr5:130778557-131278556 gene  5.2% consNotTx  5.1%
    chr5:131278557-131778556 gene  9.5% consNotTx  7.0%
Apo_Cluster
    chr11:118810001-119310000 gene  3.1% consNotTx  9.1%
Chr22
    chr22:28500001-29000000 gene  5.1% consNotTx  3.6%
    chr22:29000001-29500000 gene  3.7% consNotTx  2.6%
    chr22:29500001-30000000 gene  3.9% consNotTx  6.8%
    chr22:30000001-30200000 gene  0.2% consNotTx  8.8%
Chr21
    chr21:30323762-30823761 gene  5.3% consNotTx  6.5%
    chr21:30823762-31323761 gene  2.8% consNotTx 13.5%
    chr21:31323762-31823761 gene  7.8% consNotTx  4.9%
    chr21:31823762-32019746 gene  3.2% consNotTx  3.7%
ChrX
    chrX:147250001-147750000 gene 14.0% consNotTx  6.6%
    chrX:147750001-148250000 gene  8.3% consNotTx  4.3%
    chrX:148250001-148500000 gene  6.3% consNotTx  4.8%
Chr19
    chr19:55200001-55700000 gene 11.3% consNotTx  1.6%
    chr19:55700001-56200000 gene  8.2% consNotTx  1.3%
Alpha_Globin
    chr16:79138-579137 gene 10.5% consNotTx  2.8%
Beta_Globin
    chr11:5550000-6049999 gene  5.4% consNotTx  1.9%
    chr11:6050000-6549999 gene  6.2% consNotTx  0.0%
HOXA_cluster
    chr7:26600001-27100000 gene  5.1% consNotTx 22.0%
IGF2/H19
    chr11:300001-800000 gene  7.2% consNotTx  5.5%
    chr11:800001-900000 gene  1.8% consNotTx  5.4%
FOXP2
    chr7:112410991-112910990 gene  1.1% consNotTx 23.3%
    chr7:112910991-113410990 gene  1.1% consNotTx 16.7%
Semi-Manual Picks
Here's the stratification of the other zoo-seq regions.
I recommend picking 7q21.13 and 7q31.33 to round things
out.  
7q21.13
    chr7:88319137-88819136 gene  3.0% consNotTx  4.4%
    chr7:88819137-89319136 gene  0.3% consNotTx  8.2%
    chr7:89319137-89433560 gene  7.2% consNotTx 14.6%
7q21.3
    chr7:91589227-92089226 gene  2.9% consNotTx  3.4%
    chr7:92089227-92559635 gene  0.5% consNotTx  8.1%
7q21.3
    chr7:93650712-94150711 gene  1.8% consNotTx  9.4%
    chr7:94150712-94650711 gene  1.8% consNotTx 15.2%
    chr7:94650712-94868826 gene  1.5% consNotTx 16.2%
7q31.33
    chr7:124556444-125056443 gene  0.5% consNotTx  7.9%
    chr7:125056444-125556443 gene  1.1% consNotTx 11.2%
    chr7:125556444-125719632 gene  4.3% consNotTx 10.9%
7q32.1
    chr7:126427707-126927706 gene  5.8% consNotTx  6.8%
    chr7:126927707-127330661 gene  8.3% consNotTx  3.8%