| Track/Table Name | Release Date | 
| Affymetrix ENCODE Extension Transcription Sites & Signal | 16 Apr 2008 | 
| ENCODE TBA SCONE Conservation (Update) | 19 Oct 2007 | 
| ENCODE UC Davis ChIP-chip NimbleGen (E2F1, c-Myc, TAF, POLII) | 24 Jul 2007 | 
| ENCODE Yale ChIP-chip Sites - Jun07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Sig - Jun07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Pval - Jun07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Sites - Apr07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Sig - Apr07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Pval - Apr07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Sites - Update to Jan07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Sig - Jan07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Pval - Jan07 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Sites Update to Nov06 batch | 13 Jul 2007 | 
| ENCODE Yale ChIP-chip Sig - Nov06 batch | 13 Jul 2007 | 
| ENCODE University of Virginia DNA Replication Origins (data update) | 30 May 2007 | 
| ENCODE Duke Dnase/chip - Feb07 batch (data addition) | 21 May 2007 | 
| ENCODE Gencode RACEfrags | 18 May 2007 | 
| ENCODE Gencode Gene Annotations (March 2007) | 04 May 2007 | 
| ENCODE UCD Ng ChIP Hits (update of cMyc and E2F1 data) | 17 Apr 2007 | 
| ENCODE Yale RFBR (Regulatory Factor Binding Regions) | 21 Feb 2007 | 
| ENCODE: UCSC EvoFold (Encode predictions analyzed in Washietl, Pedersen, et al., 2007).  Replaces TBA23 EvoFold data. | 13 Feb 2007 | 
| ENCODE - University of Vienna, RNA secondary structure predicted by RNAz | 16 Jan 2007 | 
| ENCODE Yale RNA (update with October 2005 freeze data) | 10 Jan 2007 | 
| ENCODE UW/Reg QCP DNaseI Sens (replaces the following three tracks: UW/Reg DNaseI HSs,  UW/Reg Q/A,  UW DNase GM) | 07 Dec 2006 | 
| ENCODE Duke/NHGRI DNase (New Chip method in HepG2, Hela, GM, and CD4+) | 05 Dec 2006 | 
| ENCODE UT-Austin STAGE (update to add STAT1 tags) | 29 Nov 2006 | 
| ENCODE GIS Chip-PET (P53 in HCT116, STAT1 in HeLa, c-Myc in P493) | 07 Nov 2006 | 
| ENCODE NHGRI/PSU/UCSC TBA Conserved Elements | 05 Oct 2006 | 
| ENCODE NHGRI/PSU/UCSC TBA Conservation | 05 Oct 2006 | 
| ENCODE NHGRI/PSU TBA Alignments | 05 Oct 2006 | 
| ENCODE MSA Consensus Constrained Elements | 04 Oct 2006 | 
| ENCODE UC Berkeley  MAVID Alignments | 04 Oct 2006 | 
| ENCODE UC Berkeley MAVID Conservation | 04 Oct 2006 | 
| ENCODE UC Berkeley MAVID Conserved Elements | 04 Oct 2006 | 
| ENCODE Stanford MLAGAN Conserved Elements | 04 Oct 2006 | 
| ENCODE Stanford MLAGAN Conservation | 04 Oct 2006 | 
| ENCODE Stanford MLAGAN Alignments | 04 Oct 2006 | 
| ENCODE MSA Alignment Gaps | 04 Oct 2006 | 
| ENCODE MSA Alignment Agreement | 04 Oct 2006 | 
| ENCODE UNC FAIRE track (data update) | 21 Aug 2006 | 
| 8 new subtracks for ENCODE Sanger ChIP-chip track | 17 Aug 2006 | 
| ENCODE University of Uppsala, Sweden ChIP-chip Na-butyrate time series | 26 Jun 2006 | 
| ENCODE UNC FAIRE Peaks (ChIPOTle) Apr. 2006 Update, new subtrack added to UNC FAIRE | 15 Jun 2006 | 
| ENCODE UW DNase/Array GM06990 | 13 Jun 2006 | 
| ENCODE Sanger ChIP (additional data in HFL-1 cell line) | 24 May 2006 | 
| ENCODE Detection of LinEage Specific Selection (DLESS) | 19 May 2006 | 
| ENCODE Yale ChIP Sites (data replaced with 5 new transcription factors). Previous track Yale ChIP Sites renamed Yale STAT1 Sites. | 13 Jan 2006 | 
| ENCODE Yale ChIP Signal (data replaced with 5 new transcription factors). Previous track Yale ChIP Signal renamed Yale STAT1 Signal. | 13 Jan 2006 | 
| ENCODE Yale ChIP pVal (data replaced with 5 new transcription factors). Previous track Yale ChIP pVal renamed Yale STAT1 pVal. | 13 Jan 2006 | 
| ENCODE EGASP Full (Correction) | 12 Jan 2006 | 
| ENCODE EGASP Partial (data correction) | 11 Jan 2006 | 
| Recomb Hotspots: ENCODE recombination hotspots and rates | 06 Jan 2006 | 
| ENCODE Uppsala Chip (University of Uppsala, Sweden ChIP-chip coordinate corrections) | 03 Jan 2006 | 
| ENCODE Yale TAR (Replace June data with new methods) | 02 Jan 2006 | 
| ENCODE UVa DNA Rep Ori (University of Virginia DNA Replication Origins, Oct 2005 Freeze) | 29 Dec 2005 | 
| ENCODE UT-Austin STAGE (Sequence Tag Analysis of Genomic Enrichment), c-Myc in HeLa cells | 28 Dec 2005 | 
| ENCODE Affy Transfrags (updated HeLa data) | 21 Dec 2005 | 
| ENCODE Affy RNA Signal (updated HeLa data) | 21 Dec 2005 | 
| ENCODE UVa DNA Rep TR50 (University of Virginia DNA Smoothed Timing at 50% Replication, Oct 2005 Freeze) | 16 Dec 2005 | 
| ENCODE UVa DNA Rep Seg (University of Virginia DNA Replication Temporal Segmentation, Oct 2005 Freeze) | 02 Dec 2005 | 
| ENCODE Sanger ChIP Hits (Peaks and Centers, Oct 2005 Freeze) | 22 Nov 2005 | 
| ENCODE Sanger ChIP (H3, H4 histones in GM, K562 and HeLa cells, Oct 2005 Freeze) | 22 Nov 2005 | 
| ENCODE UNC FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements, Oct 2005 Freeze) | 22 Nov 2005 | 
| ENCODE UCD Ng ChIP (UC Davis ChIP-chip of E2F1, Myc in HeLa, Oct 2005 Freeze) | 18 Nov 2005 | 
| ENCODE Uppsala Chip (University of Uppsala, Sweden ChIP-chip of H3ac,HNF3b,HNF4a,USF1 in HepG2 cells, Oct 2005 Freeze) | 18 Nov 2005 | 
| ENCODE Affy Strict Sites (Affymetrix ChIP-chip of 5 factors in HL60 cells, Oct 2005 Freeze) | 18 Nov 2005 | 
| ENCODE Affy Strict (Affymetrix ChIP-chip of 5 factors in HL60 cells, Oct 2005 Freeze) | 18 Nov 2005 | 
| ENCODE Affy Strict Pval (Affymetrix ChIP-chip on 5 factors, in HL60 cells, Oct 2005 Freeze) | 18 Nov 2005 | 
| ENCODE Affy RNA (RNA abundance and transfrags, Oct 2005 Freeze) | 07 Nov 2005 | 
| ENCODE UT-Austin ChIP (c-Myc and EF24 in HeLa and 20901 fibroblasts, Oct 2005 Freeze) | 07 Nov 2005 | 
| ENCODE NHGRI DnaseI-HS (MPSS and Chip methods, in CD4 and GM09660, Oct 2005 Freeze) | 07 Nov 2005 | 
| ENCODE GIS PET RNA (update Oct 2005 Freeze and new estrogen-treated MCF7) | 07 Nov 2005 | 
| ENCODE Gencode Genes (Oct 2005 Freeze) | 07 Nov 2005 | 
| ENCODE LI Ng gIF ChIP (Addition of 5 antibodies, in HeLa cells) | 27 Oct 2005 | 
| ENCODE EGASP Update (Add Fgenesh++ corrected predictions) | 14 Oct 2005 | 
| ENCODE GIS STAT1 +/- gIF HeLa | 14 Oct 2005 | 
| ENCODE UVa DNA Rep Seg, UVa DNA Rep Ori (DNA replication timing segmentation and origins) | 04 Oct 2005 | 
| ENCODE YALE MAS TAR (additional data) | 27 Sep 2005 | 
| ENCODE YALE MAS RNA (additional data from June freeze) | 27 Sep 2005 | 
| ENCODE BU Orchid | 21 Sep 2005 | 
| ENCODE NHGRI DIPs: Whole Genome Shotgun insertion/deletion polymorphisms from Jim Mullikin/SSAHA | 21 Sep 2005 | 
| ENCODE: LI Ng gIF ChIP (HeLa) | 20 Sep 2005 | 
| ENCODE: LI Ng Validation (Pol2, Taf1, H3K4me, H3ac) | 20 Sep 2005 | 
| ENCODE Sanger ChIP-chip | 20 Sep 2005 | 
| ENCODE: Ludwig Institute/UCSD ChIP-chip - Pol II, TAF1, AcH3, H3K4me, SUZ12, and H3K27me antibodies - repackage three existing tracks into one | 20 Sep 2005 | 
| ENCODE: Yale ChIP-chip (STAT1 ab, Hela cells, P-Values) | 20 Sep 2005 | 
| ENCODE: LI gIF ChIP (HeLa) | 19 Sep 2005 | 
| ENCODE HapMap Allele Frequencies | 19 Sep 2005 | 
| ENCODE: GIS P53 5FU HCT116 | 19 Sep 2005 | 
| ENENCODE: Affy Transfrags, Affy pVal {0,2,8,32}h, Affy Sites {0,2,8,32}h | 16 Sep 2005 | 
| ENCODE: Affy RNA Signal | 16 Sep 2005 | 
| ENCODE: Yale MAS array, RNA Transcript Map, Placenta, Nimblegen Protocol | 16 Sep 2005 | 
| ENCODE: Yale MAS array, RNA Transcriptionally Active Regions, Placenta, Nimblegen Protocol | 16 Sep 2005 | 
| ENCODE: Yale ChIP-chip (STAT1 ab, Hela cells, Signal) | 16 Sep 2005 | 
| ENCODE: Yale ChIP-chip (STAT1 ab, Hela cells, Binding Sites) | 16 Sep 2005 | 
| ENCODE: Yale TAR | 16 Sep 2005 | 
| ENCODE: Stanford Endogenous Transcript Levels in HCT116 Cells; 
Stanford ChIP-chip (HCT116, Jurkat, K562 cells; Sp1, Sp3 ChIP); 
Stanford ChIP-chip Smoothed Score; 
Stanford Methylation Digest: Be2C, CRL1690, HCT116, HT1080, HepG2, JEG3, Snu182, U87; 
Stanford Methylation Digest Smoothed Score | 16 Sep 2005 | 
| ENCODE: Stanf Promoter | 15 Sep 2005 | 
| ENCODE: BU First Exon | 15 Sep 2005 | 
| ENCODE: Yale RNA | 15 Sep 2005 | 
| ENCODE: Sanger Assoc | 15 Sep 2005 | 
| ENCODE: UC Davis ChIP-chip Nimblegen - E2F1 ab, HeLa Cells | 15 Sep 2005 | 
| ENCODE: GIS RNA PET | 15 Sep 2005 | 
| ENCODE: TBA23 EvoFold (Predictions of RNA Secondary Structure Using TBA23, ENCODE Regions only) | 15 Sep 2005 | 
| ENCODE: Known+Pred RNA (Known and Predicted RNA Transcription) | 15 Sep 2005 | 
| ENCODE: UW/Regulome DNase I Hypersensitivity Probability | 14 Sep 2005 | 
| ENCODE: Regulome DNase I Hypersensitivity | 14 Sep 2005 | 
| ENCODE: NHGRI DNaseI-HS | 14 Sep 2005 | 
| ENCODE: Riken CAGE - predicted gene start sites | 13 Sep 2005 | 
| ENCODE Gene Prediction Workshop (EGASP) Updates | 12 Sep 2005 | 
| ENCODE Regions | 15 Sep 2004 |