rbioacc

Inference and Prediction of ToxicoKinetic (TK) Models

Little hack

To load all internal function of a package during dev: devtools::load_all()

A lighter package build

To make the package lighter, we have to remove the vignettes: see file .Rbuildignore

Error to recompile during package development

Sometimes, there is an Error to recompile during development after change of .stan files. A solution is to remove the rbioacc folder in R repository of the win-library (see the path written in the error message).

An other solution is to build the package from the terminal using R CMD -preclean INSTALL rbioacc from parent directory of rbioacc.

Note

• S3 Object System: https://adv-r.had.co.nz/S3.html
• Google’s R Style Guide: https://google.github.io/styleguide/Rguide.html
• testthat: https://github.com/r-lib/testthat
• covr: https://github.com/r-lib/covr
• to add a package xxr: usethis::use_package("xxr")
• to add data set datar: usethis::use_data(datar)

Build

pkgbuild::compile_dll() # to preform a fake R CMD install
roxygen2::roxygenize() # to update the documentation
devtools::install() 

Test and Check the package

devtools::test() 
devtools::check() 

then to build the package:

 devtools::build()

If the archive produce (rPBK_X.Y.Z.tar.gz) is in the workspace of the container (outside RPBK), then move the archive:

mv rPBK_X.Y.Z.tar.gz rPBK

Check as CRAN

R CMD check --as-cran

or from command line, but not working very well to be send to CRAN:

R CMD INSTALL --preclean --no-configure --build .
R CMD INSTALL --preclean --build .