ioncopy: Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Version:	2.2.2
Imports:	shiny, zip
Published:	2020-08-11
DOI:	10.32614/CRAN.package.ioncopy
Author:	Jan Budczies, Eva Romanovsky
Maintainer:	Jan Budczies <jan.budczies at med.uni-heidelberg.de>
License:	GPL-3
NeedsCompilation:	no
In views:	Omics
CRAN checks:	ioncopy results

Documentation:

Reference manual:

ioncopy.pdf

Downloads:

Package source:	ioncopy_2.2.2.tar.gz
Windows binaries:	r-devel: ioncopy_2.2.2.zip, r-release: ioncopy_2.2.2.zip, r-oldrel: ioncopy_2.2.2.zip
macOS binaries:	r-release (arm64): ioncopy_2.2.2.tgz, r-oldrel (arm64): ioncopy_2.2.2.tgz, r-release (x86_64): ioncopy_2.2.2.tgz, r-oldrel (x86_64): ioncopy_2.2.2.tgz
Old sources:	ioncopy archive

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