Last updated on 2026-05-20 00:55:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.7 | 4.75 | 45.39 | 50.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.7 | 3.45 | 32.98 | 36.43 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.7 | 8.00 | 67.02 | 75.02 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.7 | 8.00 | 64.00 | 72.00 | OK | |
| r-devel-windows-x86_64 | 0.2.7 | 8.00 | 61.00 | 69.00 | OK | |
| r-patched-linux-x86_64 | 0.2.7 | 4.17 | 36.46 | 40.63 | OK | |
| r-release-linux-x86_64 | 0.2.7 | 4.48 | 36.74 | 41.22 | OK | |
| r-release-macos-arm64 | 0.2.7 | 1.00 | 18.00 | 19.00 | OK | |
| r-release-macos-x86_64 | 0.2.7 | 4.00 | 46.00 | 50.00 | OK | |
| r-release-windows-x86_64 | 0.2.7 | 8.00 | 58.00 | 66.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.7 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.7 | 3.00 | 42.00 | 45.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.7 | 9.00 | 69.00 | 78.00 | OK |
Version: 0.2.7
Check: examples
Result: ERROR
Running examples in ‘geneset-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getEnrichrdb
> ### Title: Get EnrichrDB geneset and geneset_name Geneset is a data.frame
> ### of 2 columns with term id and gene id
> ### Aliases: getEnrichrdb
>
> ### ** Examples
>
> x = getEnrichrdb(org = "human", library = "COVID-19_Related_Gene_Sets",
+ data_dir = tempdir())
Error in (function (type, msg, asError = TRUE) :
Could not resolve host: genekitr-china.oss-accelerate.aliyuncs.com
Calls: getEnrichrdb ... strsplit -> <Anonymous> -> curlPerform -> <Anonymous> -> fun
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(geneset)
>
> test_check("geneset")
Saving _problems/test-getGO-4.R
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-getGO.R:4:3'): getGO works ─────────────────────────────────────
<COULDNT_RESOLVE_HOST/GenericCurlError/error/condition>
Error in `(function (type, msg, asError = TRUE) { if (!is.character(type)) { i = match(type, CURLcodeValues) typeName = if (is.na(i)) character() else names(CURLcodeValues)[i] } typeName = gsub("^CURLE_", "", typeName) fun = (if (asError) stop else warning) fun(structure(list(message = msg, call = sys.call()), class = c(typeName, "GenericCurlError", "error", "condition"))) })(6L, "Could not resolve host: genekitr-china.oss-accelerate.aliyuncs.com", TRUE)`: Could not resolve host: genekitr-china.oss-accelerate.aliyuncs.com
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-getGO.R:4:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─... %>% .[[4]]
5. ├─geneset::getGO(org = "human", ont = "mf", data_dir = tempdir())
6. │ └─geneset:::check_web_size(url)
7. │ ├─... %>% as.numeric()
8. │ └─RCurl::getURL(url, nobody = 1L, header = 1L)
9. │ └─RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
10. ├─stringi::stri_remove_empty_na(.)
11. │ └─stringi::stri_remove_empty(x, TRUE)
12. │ └─stringi::stri_enc_toutf8(x)
13. ├─stringr::str_remove_all(., "Content-Length: ")
14. │ └─stringr::str_replace_all(string, pattern, "")
15. │ └─stringr:::check_lengths(string, pattern, replacement)
16. │ └─vctrs::vec_size_common(...)
17. │ └─rlang::list2(...) at vctrs/R/size.R:97:3
18. ├─stringr::str_extract(., "Content-Length.*[0-9]")
19. │ └─stringr:::check_lengths(string, pattern)
20. │ └─vctrs::vec_size_common(...)
21. │ └─rlang::list2(...) at vctrs/R/size.R:97:3
22. ├─base::unlist(.)
23. ├─base::strsplit(., "\r\n")
24. └─RCurl (local) `<fn>`(...)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc