Last updated on 2025-11-12 01:49:13 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.9.1 | 4.20 | 0.14 | 4.34 | FAIL | |
| r-devel-linux-x86_64-debian-gcc | 1.9.1 | 2.76 | 0.03 | 2.79 | FAIL | |
| r-devel-linux-x86_64-fedora-clang | 1.9.1 | 415.03 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.9.1 | 493.63 | ERROR | |||
| r-devel-windows-x86_64 | 1.9.1 | 6.00 | 69.00 | 75.00 | OK | |
| r-patched-linux-x86_64 | 1.9.1 | 4.07 | 0.01 | 4.08 | FAIL | |
| r-release-linux-x86_64 | 1.9.1 | 3.79 | 0.02 | 3.81 | FAIL | |
| r-release-macos-arm64 | 1.9.1 | 2.00 | 73.00 | 75.00 | OK | |
| r-release-macos-x86_64 | 1.9.1 | 4.00 | 62.00 | 66.00 | OK | |
| r-release-windows-x86_64 | 1.9.1 | 6.00 | 0.00 | 6.00 | FAIL | |
| r-oldrel-macos-arm64 | 1.9.1 | 2.00 | 47.00 | 49.00 | OK | |
| r-oldrel-macos-x86_64 | 1.9.1 | 3.00 | 53.00 | 56.00 | OK | |
| r-oldrel-windows-x86_64 | 1.9.1 | 7.00 | 74366.00 | 74373.00 | ERROR |
Version: 1.9.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Damiano",
family = "Fantini",
role = c("aut", "cre"),
email = "damiano.fantini@gmail.com")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.9.1
Check: re-building of vignette outputs
Result: FAIL
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.9.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘getting_started_with_TCGAretriever.Rmd’ using rmarkdown
*** caught segfault ***
address 0x776, cause 'memory not mapped'
Traceback:
1: dev.off(dv)
2: eng_r(options)
3: block_exec(params)
4: call_block(x)
5: process_group(group)
6: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
7: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
8: process_file(text, output)
9: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
11: vweave_rmarkdown(...)
12: engine$weave(file, quiet = quiet, encoding = enc)
13: doTryCatch(return(expr), name, parentenv, handler)
14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
15: tryCatchList(expr, classes, parentenv, handlers)
16: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
17: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/TCGAretriever.Rcheck/vign_test/TCGAretriever", skip = TRUE, ser_elibs = "/tmp/RtmpipObEy/file3be7e55908ccb9.rds")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.9.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘getting_started_with_TCGAretriever.Rmd’ using rmarkdown
Quitting from getting_started_with_TCGAretriever.Rmd:95-110 [unnamed-chunk-4]
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.9.1
Check: re-building of vignette outputs
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
2 18.4 2 med
3 22.4 1 high
4 15.5 3 low
5 20.2 2 med
6 17.4 3 low
7 9.4 3 low
8 12.4 3 low
9 31.2 1 high
10 33.2 1 high
11 18.4 2 med
12 22.1 1 high
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 1.52 0.09 1.61 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64
Version: 1.9.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'getting_started_with_TCGAretriever.Rmd' using rmarkdown
Flavor: r-oldrel-windows-x86_64