Last updated on 2026-09-05 02:53:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.4 | 17.80 | 132.34 | 150.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.4 | 14.05 | 90.44 | 104.49 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.4 | 14.00 | 91.73 | 105.73 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.4 | 13.00 | 81.03 | 94.03 | OK | |
| r-devel-windows-x86_64 | 2.0.4 | 18.00 | 132.00 | 150.00 | OK | |
| r-patched-linux-x86_64 | 2.0.4 | 17.59 | 119.68 | 137.27 | OK | |
| r-release-linux-x86_64 | 2.0.4 | 18.40 | 119.59 | 137.99 | OK | |
| r-release-macos-arm64 | 2.0.4 | 4.00 | 30.00 | 34.00 | OK | |
| r-release-macos-x86_64 | 2.0.4 | 12.00 | 123.00 | 135.00 | OK | |
| r-release-windows-x86_64 | 2.0.4 | 19.00 | 122.00 | 141.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.4 | 4.00 | 29.00 | 33.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.4 | 12.00 | 105.00 | 117.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.4 | 26.00 | 164.00 | 190.00 | OK |
Version: 2.0.4
Check: examples
Result: ERROR
Running examples in ‘MultiPhen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mPhen
> ### Title: A function for the genetic association testing of multiple
> ### phenotypes
> ### Aliases: mPhen
> ### Keywords: genetics GWAS regression multiple phenotypes association
>
> ### ** Examples
>
> data(snps); data(snps.imputed); data(pheno)
> opts = mPhen.options(c("regression","pheno.input"))
> res = mPhen(snps, pheno, phenotypes = "all",
+ covariates = c('testPheno3', 'testPheno4'),opts = opts)
[1] "excluding 0 samples based on exclusion criteria"
> # performs a MultiPhen analysis, with snp as outcome,
> # and phenotypes testPheno1, testPheno2 as predictors,
> #with testPheno3 and testPheno4 as covariates using ordinal regression
>
> res = mPhen(snps, pheno, phenotypes = c('testPheno1', 'testPheno2'),
+ covariates = c('testPheno3', 'testPheno4'), resids = 'testPheno5', opts = opts)
[1] "excluding 0 samples based on exclusion criteria"
> # the same as above, with the fifth phenotype as residual
>
> res = mPhen(snps[,2, drop = FALSE], pheno, phenotypes = c('testPheno1', 'testPheno2'),
+ covariates = 'testPheno3', opts = opts)
[1] "excluding 0 samples based on exclusion criteria"
> # please note the use use of drop = FALSE if analysing only one SNP
>
>
> res = mPhen(snps.imputed, pheno, phenotypes = c('testPheno1', 'testPheno2'),
+ covariates = 'testPheno3', opts = opts)
[1] "excluding 0 samples based on exclusion criteria"
Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
NULL
[1] "polr failed, using Gaussian"
Error in eval(mf, parent.frame()) : object 'string' not found
Calls: mPhen ... <Anonymous> -> model.frame.default -> is.data.frame
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc