CRAN Package Check Results for Package ApplyPolygenicScore

Last updated on 2026-02-27 03:52:33 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	4.0.1	11.58	329.28	340.86	OK
r-devel-linux-x86_64-debian-gcc	4.0.1	8.00	227.57	235.57	ERROR
r-devel-linux-x86_64-fedora-clang	4.0.1	20.00	495.04	515.04	OK
r-devel-linux-x86_64-fedora-gcc	4.0.2	18.00	492.01	510.01	OK
r-devel-macos-arm64	4.0.2	3.00	86.00	89.00	OK
r-devel-windows-x86_64	4.0.1	14.00	317.00	331.00	ERROR
r-patched-linux-x86_64	4.0.1	11.02	307.57	318.59	ERROR
r-release-linux-x86_64	4.0.1	10.67	306.59	317.26	OK
r-release-macos-arm64	4.0.2	3.00	102.00	105.00	OK
r-release-macos-x86_64	4.0.2	9.00	680.00	689.00	OK
r-release-windows-x86_64	4.0.2	17.00	318.00	335.00	OK
r-oldrel-macos-arm64	4.0.2	3.00	104.00	107.00	OK
r-oldrel-macos-x86_64	4.0.2	9.00	534.00	543.00	OK
r-oldrel-windows-x86_64	4.0.2	21.00	368.00	389.00	OK

Check Details

Version: 4.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [126s/170s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat); > library(ApplyPolygenicScore); > > test_check('ApplyPolygenicScore'); Input data passed validation Input data passed validation Skipping test for >12 PGS columns as 'scales' package is available and will be used. [1] "springgreen3" [1] "darkturquoise" [1] "springgreen3" [1] "darkturquoise" Saving _problems/test-vcf-import-266.R Saving _problems/test-vcf-import-270.R [ FAIL 2 | WARN 87 | SKIP 0 | PASS 653 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-vcf-import.R:263:9'): import.vcf accurately imports INFO fields ── Expected `ncol(select.info.test.vcf$dat)` to equal `ncol.select`. Differences: `actual`: 19.0 `expected`: 18.0 ── Failure ('test-vcf-import.R:267:9'): import.vcf accurately imports INFO fields ── Expected `ncol(all.info.test.vcf$dat)` to equal `ncol.all`. Differences: `actual`: 32.0 `expected`: 31.0 [ FAIL 2 | WARN 87 | SKIP 0 | PASS 653 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 4.0.1
Check: tests
Result: ERROR Running 'testthat.R' [159s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat); > library(ApplyPolygenicScore); > > test_check('ApplyPolygenicScore'); Input data passed validation Input data passed validation Skipping test for >12 PGS columns as 'scales' package is available and will be used. [1] "springgreen3" [1] "darkturquoise" _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices 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_cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices [1] "springgreen3" [1] "darkturquoise" _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices _cairo_win32_scaled_font_ucs4_to_index:GetGlyphIndices Saving _problems/test-vcf-import-266.R Saving _problems/test-vcf-import-270.R [ FAIL 2 | WARN 87 | SKIP 0 | PASS 653 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-vcf-import.R:263:9'): import.vcf accurately imports INFO fields ── Expected `ncol(select.info.test.vcf$dat)` to equal `ncol.select`. Differences: `actual`: 19.0 `expected`: 18.0 ── Failure ('test-vcf-import.R:267:9'): import.vcf accurately imports INFO fields ── Expected `ncol(all.info.test.vcf$dat)` to equal `ncol.all`. Differences: `actual`: 32.0 `expected`: 31.0 [ FAIL 2 | WARN 87 | SKIP 0 | PASS 653 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 4.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [175s/222s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat); > library(ApplyPolygenicScore); > > test_check('ApplyPolygenicScore'); Input data passed validation Input data passed validation Skipping test for >12 PGS columns as 'scales' package is available and will be used. [1] "springgreen3" [1] "darkturquoise" [1] "springgreen3" [1] "darkturquoise" Saving _problems/test-vcf-import-266.R Saving _problems/test-vcf-import-270.R [ FAIL 2 | WARN 87 | SKIP 0 | PASS 653 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-vcf-import.R:263:9'): import.vcf accurately imports INFO fields ── Expected `ncol(select.info.test.vcf$dat)` to equal `ncol.select`. Differences: `actual`: 19.0 `expected`: 18.0 ── Failure ('test-vcf-import.R:267:9'): import.vcf accurately imports INFO fields ── Expected `ncol(all.info.test.vcf$dat)` to equal `ncol.all`. Differences: `actual`: 32.0 `expected`: 31.0 [ FAIL 2 | WARN 87 | SKIP 0 | PASS 653 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64