193ba2b3275450fe3c2f513549665b88 *CITATION
9de91f400aa48d4f0e646148c5d179f6 *DESCRIPTION
0c981d4c6bc0c70505a918b158098afe *INDEX
3cb3e64842ed50495cc1afee666703c1 *Meta/Rd.rds
97f39cfa069205fc947ab1e51ea53d4e *Meta/features.rds
c5a208db6c2a0b7c6c8e73481af3076b *Meta/hsearch.rds
01bc938b4757a5cee5a03c8d367711cb *Meta/links.rds
4ebe8bab038852a8412e7506fbb646fb *Meta/nsInfo.rds
0ed9ddadd400c132c73c76fcb899df50 *Meta/package.rds
cdba3b212ae69c0a7bca1e06fc493b60 *Meta/vignette.rds
7b61f86da6bdf81b963518901e9b009d *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/beautier
9de9c0d46978149d3eaec5ce51f87018 *R/beautier.rdb
5ffde7636046b7ce7544a51a5f9750cc *R/beautier.rdx
48ceb4b9a448e23255f32e169a67c64c *WORDLIST
74a9f6cbf17526f647f3a73886327101 *doc/demo.R
2c9503f5c6de0bedc889ddf6d68cdadf *doc/demo.Rmd
d7b81a8ff93897347222653242326515 *doc/demo.html
a84a85c2b8b5ed41b70220dd39e4d052 *doc/examples.R
c73a2f81d34a803062d0a2886b5b76fc *doc/examples.Rmd
6194c095503f8b638b72d541e295aaf0 *doc/examples.html
c8ff665b04c4e01ec238f0ada0e58f6c *doc/index.html
a127842886136a967f072bd1d2d50df7 *doc/inference_models.R
b25ff646358933ce64e49a50b6680fcb *doc/inference_models.Rmd
cfb9e9b741feb469b5ef9477ed8ce172 *doc/inference_models.html
ab8a5a5c4df00592d083429ac59b400e *extdata/2_4.xml
4518fad1510f98fa3c2956a177675e13 *extdata/2_6_0.xml
f571a0f8e7ffbac2241ad766c899dd5a *extdata/2_6_2.xml
a984eaa183aa9c5f8071a26ba26a3356 *extdata/Felinecoronavirus_Envelope_1.fas
978c74b60490f91c3272ec82c2b05eb9 *extdata/Felinecoronavirus_Envelope_1.txt
89b69e40acd8a8cb61260841c95d85d7 *extdata/Felinecoronavirus_Envelope_1.xml
9379437996332fa0c4c21031b24b4ef5 *extdata/Felinecoronavirus_Envelope_1_no_quotes.txt
e67325fd7bfce7aff6687e6e7d0f1323 *extdata/G_VII_pre2003.xml
ee9015ff9647397027e9d62f6fbbb246 *extdata/G_VII_pre2003_dates_4.txt
8470c763001b91d030ecc8cfb5beb610 *extdata/G_VII_pre2003_msa.fas
4c0cf2886802d77761fb19e3d343b1cb *extdata/G_VII_pre2003_no_tip.xml
03bd5d9d8517f7f1c1e1f4ea499d4ddf *extdata/Heleioporus_species_ND2_Pop1.fasta
0fddec382e48736adf331ee832e2f12f *extdata/THAILAND_TEST.clust_1.dated.fa
df03cb297e86c50cd1e4f8ceb8245732 *extdata/THAILAND_TEST.clust_1.dated.txt
4bff5c4a0197761802098d92904a1016 *extdata/aco_hky_nd2.xml
5a4de5602198368b992c79962204b444 *extdata/aco_mcmc_chainlength_10_store_every_1.xml
2ea273800f4116488eeb800b77913d4f *extdata/anthus_15_15.xml
7ed16c2bf51623706d6d04d5aed06ee4 *extdata/anthus_15_26.xml
4581fa3098cf89f533f1c147270dff91 *extdata/anthus_15_na.xml
0eedfd95a1fff834d513246b4e4624e2 *extdata/anthus_aco.fas
d37753c82288c23dda0c95c496f50ef9 *extdata/anthus_aco_sub.fas
fe0858e495d81990631aa9d684f942d5 *extdata/anthus_aco_sub.xml
26b58a6d7bc0f49d0638d9914bf58ba6 *extdata/anthus_aco_sub_20181016.xml
2fdedcea03178ab851085954352a46c3 *extdata/anthus_aco_sub_20181016_all.xml
0723559a4c2d7ff82277ee86a438c0c6 *extdata/anthus_aco_sub_20181016_all_monophyletic.xml
635058fe650c9df7a4b1f5070514e3c6 *extdata/anthus_aco_sub_20181016_all_one_div_x.xml
c38a508f0044f186775ca4d45cfc07ad *extdata/anthus_aco_sub_20181016_all_one_div_x_monophyletic.xml
992cf9fd0caf2936d207fa37ea7a1d82 *extdata/anthus_aco_sub_20181016_all_one_div_x_rln.xml
27618c7571bfba0da5e49cbddf8bf1ff *extdata/anthus_aco_sub_2_5_1.xml
321966c7a7d9342442e0ecd37709eff9 *extdata/anthus_aco_sub_2_6.xml
321966c7a7d9342442e0ecd37709eff9 *extdata/anthus_aco_sub_2_6_again.xml
43d1b3ca7d4746dbac4422a5df5258f7 *extdata/anthus_aco_sub_calibrated.xml
04616619e915312f562d7f7ba2f8adf5 *extdata/anthus_aco_sub_calibrated_no_prior.xml
914e22a8f33194faccae17db350b6fca *extdata/anthus_aco_sub_calibrated_rln.xml
3cc21807485f89b0db39aacab9f19828 *extdata/anthus_aco_sub_calibrated_rln_monophyletic.xml
e97ddd3db9921d9399bea9d21b992b4f *extdata/anthus_aco_sub_cbs_groupsize_4_dim.xml
58632bb9c46b2a79b5d19fe642413756 *extdata/anthus_aco_sub_two_mrca_priors.xml
eb275854328e8fc88c7ef6adcfc96ad3 *extdata/anthus_na_15.xml
4f47d3dda06c4ad6605b84cf43579113 *extdata/anthus_na_na.xml
93d45a2f0c0145ebfebdedeb073025f1 *extdata/anthus_nd2.fas
06d16968e24a50589d5143bd40c5dc01 *extdata/anthus_nd2_sub.fas
8b235cf2f1e73dfa3694d2e32be45d4c *extdata/anthus_nd3.fas
557ce9b9297b422a02e34239f0712fa9 *extdata/anthus_nd4.fas
5d521c8bad0c2a7037d90df0bba011e0 *extdata/babette_issue_26.xml
44adb9268a506091b4d45b9aeb8d5022 *extdata/bd_2_4.xml
16bed6d043bf9ca15567b3d59319236e *extdata/bd_6_taxa_2_4.xml
47008dd0b09a468b9f91ce66b703ee5e *extdata/bd_birth_rate_normal_death_rate_gamma_2_4.xml
e119bccc8398614631aa43e2ec5d7b0f *extdata/birth_rate_beta_2_4.xml
922686db0b9c63745e087c7d2adeebb2 *extdata/birth_rate_exp_2_4.xml
061aa1bfe45432b70b346fa50ed0a0e3 *extdata/birth_rate_gamma_2_4.xml
8eb627a88d8bbee08050b531eda648c4 *extdata/birth_rate_inv_gamma_2_4.xml
04c38ae3c0b26f568ac8b7e5e673c45d *extdata/birth_rate_laplace_2_4.xml
a008e7e6183d073307138212c0abddc7 *extdata/birth_rate_log_normal_2_4.xml
66be5c37ac475bf0f8ed4df4c5c0abeb *extdata/birth_rate_normal_2_4.xml
c5a60a83c1e1ecfb03920b7f8bdba789 *extdata/birth_rate_one_div_x_2_4.xml
8d0a71aa162f4965ca1fc18fdd4b3d83 *extdata/birth_rate_poisson_2_4.xml
ab8a5a5c4df00592d083429ac59b400e *extdata/birth_rate_uniform_2_4.xml
83175e1969649d46fc559ddd3c519a24 *extdata/cbs_2_4.xml
65237eca43bfa7fb918400c07436faa0 *extdata/cbs_6_taxa_2_4.xml
39051f7dc27012bfa2ddda745a0ac856 *extdata/ccp_2_4.xml
9df6cb5b1c316d9c6cf5ab653b366d47 *extdata/ccp_6_taxa_2_4.xml
b4ba448f219d916b430e030966df9f09 *extdata/ccp_pop_size_gamma_2_4.xml
4711d7922aa14d6cf0e1f37552ca8919 *extdata/cep_2_4.xml
fb1216067317ebcf381f4db89a3a4dc3 *extdata/cep_6_taxa_2_4.xml
f62ad967d7a6410ee3d0d97ab5880732 *extdata/gtr_2_4.xml
cdbd9db897ef307f4e8a6e7807eacdd9 *extdata/gtr_2_6.xml
842b2a51445d2852e91ebd7b9a8bf2f4 *extdata/gtr_gcc_1_2_4.xml
b18cf933270115e6c63fe9f0bc328d09 *extdata/gtr_gcc_2_2_4.xml
1638e99fe0d85b60a8bc5bf8feb69d5c *extdata/gtr_gcc_2_shape_1_5_2_4.xml
a0ede49dff20b1777cb358bfdcee3265 *extdata/gtr_gcc_2_shape_1_5_prop_invariant_0_5_2_4.xml
e86ff19c6f0600df95c20ff1f3690115 *extdata/gtr_no_rate_estimation_2_4.xml
dc5c1bed1e7f4d8421d5cca71a70398c *extdata/hky_2_4.xml
662095277971e20463c8a44c1a31e0a0 *extdata/hky_2_6.xml
74bd7cf5cf778538cd4f007e026f4164 *extdata/hky_gcc_1_2_4.xml
5e480a92dcb54846062106dd134c5da2 *extdata/hky_gcc_2_2_4.xml
eba38f72e1007637fc483c60c58ffa58 *extdata/hky_gcc_4_2_4.xml
56da253f367bb64bae70b57f4464848d *extdata/hky_kappa_2_4.xml
d89d329cb1ebee6417de2f7fd6f97b8e *extdata/hky_prop_invariant_0_5_2_4.xml
03527519a5af45160bb449fa2173799e *extdata/issue_135_mrca_estimate_beauti.xml
810461bca47fd24343a5a24127b7cdb5 *extdata/issue_135_mrca_estimate_beautier.xml
37c2611661760eb80ec5a2f77703ffb2 *extdata/issue_135_mrca_no_estimate_beauti.xml
810461bca47fd24343a5a24127b7cdb5 *extdata/issue_135_mrca_no_estimate_beautier.xml
00aa723c6c7a277d5a369d0d3a7bc96d *extdata/issue_135_no_mrca_estimate_beauti.xml
68a4d04aa1e645f21b3c8a5607669f69 *extdata/issue_135_no_mrca_estimate_beautier.xml
b0db4e11fa72209145ec30ae47d12c46 *extdata/issue_135_no_mrca_no_estimate_beauti.xml
8d0f99b1d4cbcbf084f61979c6e1571d *extdata/issue_135_no_mrca_no_estimate_beautier.xml
4b6cc23a9629285cece92770f41180e9 *extdata/issue_137_lognormal_estimate_beauti.xml
163af492e7d7e0c70c098419e44832a4 *extdata/issue_138_v2_6_7.xml
dd92d10dd3ff3cd24efc25992235b8e6 *extdata/issue_138_v2_7.xml
122caca0f9800e46b09731caff2d7ab7 *extdata/issue_142.xml
ab8a5a5c4df00592d083429ac59b400e *extdata/jc69_2_4.xml
f40dc625706ffda64e04b2e77660e8b5 *extdata/jc69_gcc_2_2_4.xml
ca2ce3159952d4a37a18328f80884b83 *extdata/jc69_gcc_2_shape_1_5_2_4.xml
a9efb6806a542a76e7bf23b37193caf7 *extdata/jc69_gcc_2_shape_1_5_prop_invariant_0_5_2_4.xml
ec4b822379788832562a7f361ad3c704 *extdata/rln_2_4.xml
e9e98c887c8b041dc58ba2ac588fa61c *extdata/rln_2_6.xml
4bfb4ab55e0dc2b04763f05ae64aa564 *extdata/rln_and_tipdates_babette_issue_26_v2_6.xml
16c8ec7976acefc0aff158ea50b83cda *extdata/rln_mrca_2_5.xml
4a05059ba5b019a70b037252adfbe455 *extdata/rln_mrca_one_div_x_2_5.xml
a2890d3c957559edaa4cccf158c2057a *extdata/rln_tipdates_2_6.xml
9e610c7d7780a6614d17d23e8ba0f404 *extdata/rln_uclstdev_beta_2_4.xml
ab8a5a5c4df00592d083429ac59b400e *extdata/strict_clock_2_4.xml
8129481386c11ce5aa8a5846dd721415 *extdata/strict_clock_rate_0_5_2_4.xml
e3517e0e9266d590e79870f7d06976fc *extdata/test_output_0.fas
5eedced14a925e900091e7fababf818b *extdata/test_output_0_n_init_attempts.xml
a39f7a45f4e0329178cb0fb4c2cad1dc *extdata/test_output_0_pre_burnin.xml
197476cd508359a9d682e67100fe9669 *extdata/test_output_0_tipdates.tsv
a7ce1f2ed7f9b7bae358166c0528f30a *extdata/test_output_2.fas
e3517e0e9266d590e79870f7d06976fc *extdata/test_output_5.fas
ec083e238606229bcc5ad0a2ea17a456 *extdata/test_output_6.fas
21597125741d41b743cd6cb805fd7805 *extdata/tipdates_2_6.xml
d655b6f360f4e79595a82182cd50827d *extdata/tn93_2_4.xml
17f5a5551eaca220a6723bdaefe3c94b *extdata/tn93_2_6.xml
6bc2ab38544831cf1b1b539d773afd7b *extdata/tn93_gcc_1_2_4.xml
f5bbf19d02a1f37e4a95ad083e9c6dd7 *extdata/tn93_gcc_2_2_4.xml
a50f1bab306c3e948c066cf9bacb332d *extdata/tn93_kappas_not_estimated.xml
ab8a5a5c4df00592d083429ac59b400e *extdata/yule_2_4.xml
37aa102674620ffd81f0d0e90fe3fa3f *help/AnIndex
a46895df36f467f23cc8b58cb0aace18 *help/aliases.rds
de4218df4dc9b2800a39d09b310a1560 *help/beautier.rdb
951202ede7ad1ceefaf265a9a4c9bc45 *help/beautier.rdx
f7de71e5ff24145a37bf281e4d155cfa *help/figures/AppVeyor.png
3f25ab37a1f6270f76c025cf6eda5421 *help/figures/Codecov.png
b55c56f3943a394162527954ca4a3009 *help/figures/GitHubActions.png
cefa8b5db1c53b4ff2bdc0c66e3f55a9 *help/figures/beautier_logo.png
6aac41d240f1fd39b87a403bcb4dd452 *help/paths.rds
66d45ffc27789ce20e9d8a709bedd728 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
