Package: pkgndep
Type: Package
Title: Analyze Dependency Heaviness of R Packages
Version: 1.99.3
Date: 2023-10-12
Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
                  comment = c('ORCID'="0000-0002-7395-8709"))
Depends: R (>= 4.0.0)
Imports: ComplexHeatmap (>= 2.6.0), GetoptLong, GlobalOptions, utils,
        grid, hash, methods, BiocManager, brew, BiocVersion
Suggests: knitr, rmarkdown, svglite, callr, rjson, Rook, igraph,
        ggplot2, ggrepel, base64, testthat, cowplot
Description: A new metric named 'dependency heaviness' is proposed that measures the number 
    of additional dependency packages that a parent package brings to its child package 
    and are unique to the dependency packages imported by all other parents.  
    The dependency heaviness analysis is visualized by a customized heatmap. 
    The package is described in <doi:10.1093/bioinformatics/btac449>. 
    We have also performed the dependency heaviness analysis on the CRAN/Bioconductor 
    package ecosystem and the results are implemented as a web-based database 
    which provides comprehensive tools for querying dependencies of individual R packages. 
    The systematic analysis on the CRAN/Bioconductor ecosystem is described in 
    <doi:10.1016/j.jss.2023.111610>. From 'pkgndep' version 2.0.0, the heaviness 
    database includes snapshots of the CRAN/Bioconductor ecosystems for many old R versions.
URL: https://github.com/jokergoo/pkgndep
VignetteBuilder: knitr
License: MIT + file LICENSE
NeedsCompilation: no
Packaged: 2023-10-12 19:31:30 UTC; guz
Author: Zuguang Gu [aut, cre] (<https://orcid.org/0000-0002-7395-8709>)
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Repository: CRAN
Date/Publication: 2023-10-13 05:50:02 UTC
Built: R 4.4.3; ; 2025-10-13 09:16:36 UTC; windows
