# Handling Taxonomic Lists

## Documentation for package ‘taxlist’ version 0.1.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

taxlist-package | Handling taxonomic lists.
$-method | Extract or replace parts of a 'taxlist' object.
$<- | Extract or replace parts of a 'taxlist' object.
$<--method | Extract or replace parts of a 'taxlist' object.
accepted_name | Retrieve or set accepted name for taxon concepts.
accepted_name-method | Retrieve or set accepted name for taxon concepts.
accepted_name<- | Retrieve or set accepted name for taxon concepts.
accepted_name<--method | Retrieve or set accepted name for taxon concepts.
add_concept | Insert a new taxon concept in a 'taxlist' object.
add_concept-method | Insert a new taxon concept in a 'taxlist' object.
add_level | Add or modify level entries in single concepts.
add_level-method | Add or modify level entries in single concepts.
add_level<- | Add or modify level entries in single concepts.
add_level<--method | Add or modify level entries in single concepts.
add_parent | Add or modify parent entries in taxon concepts.
add_parent-method | Add or modify parent entries in taxon concepts.
add_parent<- | Add or modify parent entries in taxon concepts.
add_parent<--method | Add or modify parent entries in taxon concepts.
add_synonym | Insert synonyms in a 'taxlist' object.
add_synonym-method | Insert synonyms in a 'taxlist' object.
add_trait | Add trait variables to a taxonomic list.
add_trait-method | Add trait variables to a taxonomic list.
add_view | Add a new reference in a taxonomic list.
add_view-method | Add a new reference in a taxonomic list.
as.list | Coerce an S4 object to a list.
as.list-method | Coerce an S4 object to a list.
backup_object | Backups R objects.
change_cocept | Move a name to a different concept.
change_concept<- | Move a name to a different concept.
change_concept<--method | Move a name to a different concept.
clean | Clean orphaned records.
clean-method | Clean orphaned records.
df2taxlist | Convert a Data Frame into a taxlist Object
df2taxlist-method | Convert a Data Frame into a taxlist Object
Easplist | Species list for East Africa.
Easplist-data | Species list for East Africa.
Extract | Extract or replace parts of a 'taxlist' object.
get_children | Retrieve children or parents of determined concepts.
get_children-method | Retrieve children or parents of determined concepts.
get_parents | Retrieve children or parents of determined concepts.
get_parents-method | Retrieve children or parents of determined concepts.
levels | Set hierarchical levels in 'taxlist' objects
levels-method | Set hierarchical levels in 'taxlist' objects
levels<- | Set hierarchical levels in 'taxlist' objects
levels<--method | Set hierarchical levels in 'taxlist' objects
merge_taxa | Merge concepts.
merge_taxa-method | Merge concepts.
S4_to_list | Coerce an S4 object to a list.
subset | Subset method for 'taxlist' objects.
subset-method | Subset method for 'taxlist' objects.
summary | Print overview for 'taxlist' objects.
summary-method | Print overview for 'taxlist' objects.
tax2traits | Add taxonomic information to slot 'taxonTraits'.
tax2traits-method | Add taxonomic information to slot 'taxonTraits'.
taxlist | Class taxlist.
taxlist-class | Class taxlist.
taxon_names | Retrieve or replace slot 'taxonNames' in 'taxlist' objects.
taxon_names-method | Retrieve or replace slot 'taxonNames' in 'taxlist' objects.
taxon_names<- | Retrieve or replace slot 'taxonNames' in 'taxlist' objects.
taxon_names<--method | Retrieve or replace slot 'taxonNames' in 'taxlist' objects.
taxon_relations | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects
taxon_relations-method | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects
taxon_relations<- | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects
taxon_relations<--method | Retrieve or replace Slot 'taxonRelations' in 'taxlist' objects
taxon_traits | Retrieve or replace slot 'taxonTraits' in "taxlist" objects.
taxon_traits-method | Retrieve or replace slot 'taxonTraits' in "taxlist" objects.
taxon_traits<- | Retrieve or replace slot 'taxonTraits' in "taxlist" objects.
taxon_traits<--method | Retrieve or replace slot 'taxonTraits' in "taxlist" objects.
taxon_views | Management of concept views in taxonomic lists.
taxon_views-method | Management of concept views in taxonomic lists.
taxon_views<- | Management of concept views in taxonomic lists.
taxon_views<--method | Management of concept views in taxonomic lists.
tnrs | Phylotastic Taxonomic Name Resolution Service.
tnrs-method | Phylotastic Taxonomic Name Resolution Service.
tv2taxlist | Import species lists from Turboveg databases.
[ | Extract or replace parts of a 'taxlist' object.
[-method | Extract or replace parts of a 'taxlist' object.
[<- | Extract or replace parts of a 'taxlist' object.
[<--method | Extract or replace parts of a 'taxlist' object.