# Integrative Bayesian Analysis of Transcriptomic and CGH Data

## Documentation for package ‘iBATCGH’ version 1.3

- DESCRIPTION file.

## Help Pages

iBATCGH-package | Integrative Bayesian Analysis of Transcriptomic and CGH data
Center | Preprocessing - Center gene expression data
iBAT | Main - Mixture selection prior
iBATCGH | Integrative Bayesian Analysis of Transcriptomic and CGH data
iBATProbit | Main - Probit selection prior
Inference | Postprocessing - Posterior Inference
InferenceA | Postprocessing - Inference on the transition matrix
InferenceMu | Postprocessing - Inference on the vector of state specific mean
InferenceR | Postprocessing - Inference on the association matrix
InferenceSd | Postprocessing - Inference on the vector of state specific sd
InferenceXi | Postprocessing - Inference on the latent states
InitMu | Preprocessing - Initialize state specific mean vector
InitXi | Preprocessing - Initialize matrix of latent states
NCI_60 | NCI-60 cancer cell lines data
RListToVector | Internal function
Scenario1 | Simulated data - Scenario 1
Scenario2 | Simulated data - Scenario 2
TCGA_lung | TCGA lung squamous cell carcinoma data
Tran | Preprocessing - Tran