# Analysis of chromosomal interactions data (correction, segmentation and comparison)

## Documentation for package ‘chromoR’ version 1.0

- DESCRIPTION file.

## Help Pages

chromoR-package | Analysis of chromosomal interactions data (Hi-C data)
buildCIM | Builds Chromosomal Interactions Maps
chromoR | Analysis of chromosomal interactions data (Hi-C data)
compareCIM | Compares 2 CIMs
correctCIM | Corrects a chromosomal interactions map (CIM)
correctPairCIM | Corrects a pairwise CIM
imr90.1 | A corrected CIM of replicate 1 of IMR90, for chromosomes 1 and 2
imr90.1.obs | A non-corrected CIM of replicate 1 of IMR90, for chromosomes 1 and 2
imr90.2 | A CIM of replicate 2 of IMR90, for chromosomes 1 and 2
seg | A segmentation for imr90.1 and imr90.2 CIMs
seg.imr90.obs | A segmentation for imr90.1.obs CIM
segmentCIM | Segments a 1D contact profile (1D CIM)