cape-package	cape-package
bin.vector	bin.vector
calc.delta.errors	calc.delta.errors
calc.p	calc.p
cape	cape-package
consec.pairs	consec.pairs
delete.pheno	delete.pheno
direct.influence	direct.influence
error.prop	error.prop
filter.hwe	filter.hwe
filter.maf	filter.maf
genome.wide.threshold.1D	genome.wide.threshold.1D
genome.wide.threshold.1D.parallel	genome.wide.threshold.1D.parallel
get.chr.markers	get.chr.markers
get.col	get.col
get.col.num	get.col.num
get.covar	get.covar
get.eigentraits	get.eigentraits
get.geno	get.geno
get.geno.with.covar	get.geno.with.covar
get.layout.mat	get.layout.mat
get.linearly.independent	get.linearly.independent
get.marker.chr	get.marker.chr
get.marker.idx	get.marker.idx
get.marker.location	get.marker.location
get.marker.name	get.marker.name
get.marker.num	get.marker.num
get.marker.val	get.marker.val
get.network	get.network
get.pairs.for.pairscan	get.pairs.for.pairscan
get.pheno	get.pheno
histPheno	histPheno
impute.missing.geno	impute.missing.geno
kinship	kinship
kinship.on.the.fly	kinship.on.the.fly
linkage.blocks.network	linkage.blocks.network
make.data.obj	make.data.obj
marker2covar	marker2covar
myImagePlot	myImagePlot
norm.pheno	norm.pheno
obesity.cross	obesity.cross
one.pairscan.parallel	one.pairscan.parallel
one.singlescan	one.singlescan
pair.matrix	pair.matrix
pairscan	pairscan
pairscan.kin	pairscan.kin
pairscan.noKin	pairscan.noKin
pairscan.null	pairscan.null
pheno2covar	pheno2covar
plotCollapsedVarInf	plotCollapsedVarInf
plotNetwork	plotNetwork
plotPairscan	plotPairscan
plotPheno	plotPheno
plotPhenoCor	plotPhenoCor
plotSinglescan	plotSinglescan
plotSinglescan.heat	plotSinglescan.heat
plotSVD	plotSVD
plotVariantInfluences	plotVariantInfluences
qqPheno	qqPheno
read.geno	read.geno
read.pheno	read.pheno
read.population	read.population
remove.ind	remove.ind
remove.markers	remove.markers
report.progress	report.progress
rotate.mat	rotate.mat
rz.transform	rz.transform
segment.region	segment.region
select.by.chr	select.by.chr
select.by.ind	select.by.ind
select.eigentraits	select.eigentraits
select.markers.for.pairscan	select.markers.for.pairscan
select.pheno	select.pheno
singlescan	singlescan
sortByThenBy	sortByThenBy
sortCross	sortCross
writePopulation	writePopulation
writeVariantInfluences	writeVariantInfluences
