# Adaptive Generalized PCA

## Documentation for package ‘adaptiveGPCA’ version 0.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adaptiveGPCA-package | adaptiveGPCA: A package for structured dimensionality reduction
adaptivegpca | Adaptive gPCA
AntibioticPhyloseq | Antibiotic time course experiment.
AntibioticSmall | A subset of the antibiotic data
estimateComponents | Estimate parameters in hierarchical model
gpca | gPCA
gpcaFullFamily | Make a sequence of ordinations
inspectTaxonomy | Shiny gadget for tree/taxonomy inspection
plot.adaptivegpca | Plot an adaptivegpca object
print.adaptivegpca | Print an adaptivegpca object
processPhyloseq | Make the input matrices for adaptive gPCA
varianceOnEvecs | Variance along eigenvectors of Q
visualizeFullFamily | Shiny gadget for adaptive gPCA