# Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms

## Documentation for package ‘HiCglmi’ version 1.1

- DESCRIPTION file.

## Help Pages

HiCglmi-package | Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
annotateHiCBin | Annotate Hi-C bins with genomic feature data.
createHiCDataset | Create a dataset for further processing with the R package.
dataExample | Hi-C matrix and ChIP-seq peaks.
filterCouples | Filter Hi-C data based on knowledge.
HiCglmi | Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
HiCglmiModel | The generalized linear model with interactions.
HiCglmiProcData | Process data for further generalized linear regression with interactions (GLMI).
readGFBed | Read genomic feature bed file
testDistancePowerLawDistrib | Check log-log linear relation between distance and Hi-C count.