spaMM-package	spaMM
adjacency	autoregressive
AIC	extractors
AIC.HLfit	extractors
anova	anova.HLfit
anova.HLfit	anova.HLfit
arabidopsis	arabidopsis
Beta	spaMM-internal
Beta-distribution-random-effects	HLfit
binomialize	multinomial
blackcap	blackcap
CAR	autoregressive
coef.corMatern	corMatern
coef<-.corMatern	corMatern
COMPoisson	COMPoisson
confint	confint
confint.HLfit	confint
corFactor.corMatern	corMatern
corMatern	corMatern
corMatrix.corMatern	corMatern
Corr	extractors
corrHLfit	corrHLfit
corrHLfit_body	spaMM-internal
corrMatrix	corrMatrix
corrMM.LRT	spaMM-internal
covStruct	covStruct
crack	spaMM-internal
def_AUGI0_ZX_sparsePrecision	PLS-internals
def_sXaug_EigenDense_QRP_Chol_scaled	PLS-internals
def_sXaug_Matrix_QRP_CHM_scaled	PLS-internals
designL.from.Corr	designL.from.Corr
deviance	extractors
deviance.HLfit	extractors
dev_resids	extractors
dim.precision	spaMM-S3
Earth	make.scaled.dist
extractors	extractors
filled.mapMM	mapMM
fitme	fitme
fitme_body	spaMM-internal
fitted	extractors
fitted.HLfit	extractors
fitted.HLfitlist	multinomial
fixedLRT	fixed.LRT
fixef	extractors
fixef.HLfit	extractors
freight	freight
Gamma	inverse.Gamma
getCall.HLfit	spaMM-internal
getCovariate.corMatern	corMatern
getDistMat	extractors
getPar	spaMM-internal
get_any_IC	extractors
get_boot_response	extractors
get_fixefVar	predict
get_from_MME	PLS-internals
get_from_MME.AUGI0_ZX_sparsePrecision	PLS-internals
get_from_MME.default	PLS-internals
get_from_MME.sparseMatrix	PLS-internals
get_from_MME.sXaug_EigenDense_QRP_Chol_scaled	PLS-internals
get_from_MME.sXaug_Matrix_QRP_CHM_scaled	PLS-internals
get_from_MME_default	PLS-internals
get_from_MME_default.Matrix	PLS-internals
get_from_MME_default.matrix	PLS-internals
get_HLCorcall	spaMM-internal
get_intervals	predict
get_predCov_var_fix	predict
get_predVar	predict
get_residVar	predict
get_respVar	predict
get_RLRTSim_args	extractors
get_ZALMatrix	extractors
good-practice	good-practice
HLCor	HLCor
HLCor.obj	spaMM-internal
HLCor_body	spaMM-internal
HLfit	HLfit
HLfit.obj	spaMM-internal
HLfit_body	spaMM-internal
Initialize.corMatern	corMatern
intervals	predict
inverse.Gamma	inverse.Gamma
landMask	seaMask
LevenbergM	options
Loaloa	Loaloa
LogAbsDetWrap	spaMM-internal
logDet.corMatern	corMatern
logLik	extractors
logLik.HLfit	extractors
logLik.HLfitlist	multinomial
LRT	anova.HLfit
makenewname	spaMM-internal
makeTicks	spaMM-internal
make_scaled_dist	make.scaled.dist
mapMM	mapMM
Matern	Matern.corr
Matern.corr	spaMM-internal
MaternCorr	Matern.corr
MaternCorr.default	Matern.corr
MaternCorr.ff	Matern.corr
multi	multinomial
multinomial	multinomial
negbin	negbin
niceLabels	spaMM-internal
Nmatrix	scotlip
noNonSpatialbarsMM	spaMM-internal
oceanmask	seaMask
overcat	spaMM-internal
pastefrom	spaMM-internal
pedigree	pedigree
phiHGLM	phiHGLM
plot	plot.HL
plot.HLfit	plot.HL
PLS-internals	PLS-internals
predict	predict
predict.HLfit	predict
Predictor	Predictor
preprocess_fix_corr	predict
print	summary.HL
print.arglist	spaMM-S3
print.fixedLRT	summary.HL
print.HLfit	summary.HL
print.HLfitlist	summary.HL
print.predictions	spaMM-S3
print.predictor	spaMM-S3
print.vcov.HLfit	spaMM-S3
ranef	extractors
ranef.HLfit	extractors
recalc.corMatern	corMatern
residuals	extractors
residuals.HLfit	extractors
rho.mapping	make.scaled.dist
salamander	salamander
scotlip	scotlip
seaMask	seaMask
seeds	seeds
separation	separation
simulate	simulate.HLCor
simulate.HLfit	simulate.HLCor
simulate.HLfitlist	simulate.HLCor
spaMM	spaMM
spaMM-conventions	spaMM-conventions
spaMM-S3	spaMM-S3
spaMM.colors	spaMMcolors
spaMM.filled.contour	spaMM.filled.contour
spaMM.getOption	options
spaMM.options	options
spaMMplot2D	mapMM
spaMM_Gamma	spaMM-internal
spaMM_glm	GLM.fit
spaMM_glm.fit	GLM.fit
sparse_precision	sparse_precision
stripHLfit	stripHLfit
summary	summary.HL
summary.fixedLRT	summary.HL
summary.HLfit	summary.HL
summary.HLfitlist	summary.HL
sym_eigen	sym_svd
ULI	spaMM-internal
update	update
update.HLfit	update
Variogram.corMatern	corMatern
vcov	extractors
vcov.HLfit	extractors
wafers	wafers
welding	welding
worldcountries	seaMask
