# Oxycline Index from Matrix Echograms

## Documentation for package ‘oXim’ version 1.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

oXim-package | Oxycline Index from Matrix Echograms
colPalette | Default color palette most using on acostic echograms.
createFilterSetting | Create filter-settings Object.
defaultFilterSettings | Default set of filter parameters.
echogramPlot | Plot a matrix of a filtered echogram.
echogramPlot.default | Plot a matrix of a filtered echogram.
echogramPlot.echoData | echogramPlot method for echoData
echogramPlot.matrix | Plot a matrix of a filtered echogram.
echogramPlot.oxyclineData | echogramPlot method for oxyclineData
getOxyrange | Takes a matrix of echogram and calculate Oxycline.
oXim | Oxycline Index from Matrix Echograms
plot.echoData | Plot method for echoData Objects.
plot.oxyclineData | Plot method for oxyclineData
print.echoData | Print method for echoData Objects.
print.oxyclineData | Print method for oxyclineData Objects.
print.summary.echoData | Print method for summary.echoData
print.summary.oxyclineData | Print method for summary.oxyclineData
readEchograms | Takes outputs from Echopen and generates a matrix to calculate Oxycline.
summary.echoData | Summary method for echoData
summary.oxyclineData | Summary method for oxyclineData Objects.