# Population Genetic Data Analysis Using Genepop

## Documentation for package ‘genepop’ version 1.0.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

genepop-package | Population genetic analyses using the Genepop software
basic_info | Allele and genotype frequencies
Contingency-test | Exact test on a single contingency table
conversion | File conversions
Differentiation | Tests of genic and genotypic differentiation
diploidize | Various data manipulation utilities
Fst | Fst (or rho_ST) estimation
genedivFis | Gene diversities and Fis (or rho_IS)
genepop | Population genetic analyses using the Genepop software
genepop-internals | Programming utilities
getVersion | Programming utilities
Hardy-Weinberg | Tests of Hardy-Weinberg genotypic proportions
HWtable_analysis | Tests of Hardy-Weinberg genotypic proportions
IBD | Isolation by distance
ibd | Isolation by distance
Linkage | Tables and exact test for genotypic linkage disequilibrium
manipulation | Various data manipulation utilities
Nm_private | Private allele method
nulls | Estimation of allele frequencies under genotyping failure.
pop_to_indiv | Various data manipulation utilities
relabel_alleles | Various data manipulation utilities
sample_haploid | Various data manipulation utilities
setMantelSeed | Set random generator seed for Mantel test
setRandomSeed | Set random generator seed (except for Mantel test)
set_restriction | Programming utilities
struc | Exact test on a single contingency table
test_diff | Tests of genic and genotypic differentiation
test_HW | Tests of Hardy-Weinberg genotypic proportions
test_LD | Tables and exact test for genotypic linkage disequilibrium
write_LD_tables | Tables and exact test for genotypic linkage disequilibrium