# Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations

## Documentation for package ‘MSIseq’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

MSIseq-package | Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Tumor Exome Somatic Mutations
Compute.input.variables | Compute Mutation Counts from Tumor Exome Somatic Mutations
find.mono.repeats | Find Mono-nucleotide Repeats
MSIseq | Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Tumor Exome Somatic Mutations
MSIseq.classify | Classify Microsatellite Instability with MSIseq Classifier
MSIseq.train | Build Microsatellite Instability Classification Model with Training Dataset
NGStestdata | Mutation Annotation Data with Test Set Samples
NGStestseqLen | Capture Sequence Length for Test Set Samples
NGStesttype | Cancer Types for the TCGA Test Set Samples
NGStrainclass | MSI Status Classification for the TCGA Training Set Samples
NGStraindata | Mutation Annotation Data with Training Set Samples
NGStrainseqLen | Capture Sequence Length for Training Set Samples
NGStraintype | Cancer Types for the TCGA Training Set Samples
read.fasta | Read Fasta File
test.mutationNum | Table of Mutation Numbers in Test Set Samples
train.mutationNum | Table of Mutation Numbers in Train Set Samples