DLMtool-package	DLMtool-package
AAVY	AAVY
Albacore	Albacore
alphaconv	alphaconv
Atlantic_mackerel	Atlantic_mackerel
avail	avail
AvC	AvC
barplot.MSE	barplot.MSE
betaconv	betaconv
BK	BK
BK_CC	BK_CC
BK_ML	BK_ML
BlankSelPlot	BlankSelPlot
Blow_opt	Blow_opt
Bluefin_tuna	Bluefin_tuna
Bluefin_tuna_WAtl	Bluefin_tuna_WAtl
Blue_shark	Blue_shark
boxplot.Data	boxplot.Data
boxplot.MSE	boxplot.MSE
Butterfish	Butterfish
CalcInput	CalcInput
calcMean	calcMean
CalcOutput	CalcOutput
calcProb	calcProb
Can	Can
Cant	Cant
CC1	CC1
CC4	CC4
CheckConverg	CheckConverg
checkMSE	checkMSE
China_rockfish	China_rockfish
ChkDatNA	ChkDatNA
ChkObj	ChkObj
ChooseEffort	ChooseEffort
ChooseM	ChooseM
ChooseSelect	ChooseSelect
Cobia	Cobia
compplot	compplot
CompSRA	CompSRA
CompSRA4010	CompSRA4010
condmet	condmet
Converge	Converge
COSEWIC_plot	COSEWIC_plot
cparscheck	cparscheck
Cplot	Cplot
CSRA	CSRA
CSRAfunc	CSRAfunc
curE	curE
curE75	curE75
cv	cv
DAAC	DAAC
Data-class	Data-class
DataDescription	DataDescription
Data_xl	Data_xl
DBSRA	DBSRA
DBSRA4010	DBSRA4010
DBSRA_40	DBSRA_40
DBSRA_ML	DBSRA_ML
DCAC	DCAC
DCAC4010	DCAC4010
DCAC_40	DCAC_40
DCAC_ML	DCAC_ML
DD	DD
DD4010	DD4010
DDe	DDe
DDe75	DDe75
DDes	DDes
DD_R	DD_R
DecE_Dom	DecE_Dom
DecE_HDom	DecE_HDom
DecE_NDom	DecE_NDom
DepF	DepF
derive_beta_par	derive_beta_par
DFO_hist	DFO_hist
DFO_plot	DFO_plot
DFO_plot2	DFO_plot2
DFO_proj	DFO_proj
DLMDataDir	DLMDataDir
DLMextra	DLMextra
DLMtool	DLMtool-package
dnormal	dnormal
DOM	DOM
doprojPI_cpp	doprojPI_cpp
DTe40	DTe40
DTe50	DTe50
DynF	DynF
EtargetLopt	EtargetLopt
Example_datafile	Example_datafile
Fadapt	Fadapt
Fdem	Fdem
Fdem_CC	Fdem_CC
Fdem_ML	Fdem_ML
Fease	Fease
Fease-class	Fease-class
Fease_xl	Fease_xl
Feasibility	Feasibility
Feasibility2	Feasibility2
fetch.file.names	fetch.file.names
FlatE_Dom	FlatE_Dom
FlatE_HDom	FlatE_HDom
FlatE_NDom	FlatE_NDom
Fleet-class	Fleet-class
FleetDescription	FleetDescription
FMSYref	FMSYref
FMSYref50	FMSYref50
FMSYref75	FMSYref75
ForceCor	ForceCor
Fratio	Fratio
Fratio4010	Fratio4010
Fratio_CC	Fratio_CC
Fratio_ML	Fratio_ML
GB_CC	GB_CC
GB_slope	GB_slope
GB_target	GB_target
Gcontrol	Gcontrol
Generic_DecE	Generic_DecE
Generic_FlatE	Generic_FlatE
Generic_Fleet	Generic_Fleet
Generic_IncE	Generic_IncE
Generic_Obs	Generic_Obs
genLenComp	genLenComp
getAFC	getAFC
getBH	getBH
getBlow	getBlow
getclass	getclass
getEffhist	getEffhist
getFMSY3	getFMSY3
getFref3	getFref3
getGpars	getGpars
getmov2	getmov2
getq3	getq3
getsel	getsel
gettempvar	gettempvar
Gulf_blue_tilefish	Gulf_blue_tilefish
HDAAC	HDAAC
Herring	Herring
hist2	hist2
ICI	ICI
ICI2	ICI2
Imp-class	Imp-class
ImpDescription	ImpDescription
Imprecise_Biased	Imprecise_Biased
Imprecise_Unbiased	Imprecise_Unbiased
IncE_HDom	IncE_HDom
IncE_NDom	IncE_NDom
initialize	initialize-methods
initialize,Data-method	initialize-methods
initialize,DLM_general-method	initialize-methods
initialize,Fease-method	initialize-methods
initialize,Fleet-method	initialize-methods
initialize,MSE-method	initialize-methods
initialize,Obs-method	initialize-methods
initialize,OM-method	initialize-methods
initialize,Stock-method	initialize-methods
initialize-methods	initialize-methods
Input	Input
InputRec-class	InputRec-class
IOTC_plot	IOTC_plot
Iratio	Iratio
iSCAM2Data	iSCAM2Data
iSCAM2DLM	iSCAM2DLM
iSCAMcomps	iSCAMcomps
iSCAMinds	iSCAMinds
Islope1	Islope1
Islope4	Islope4
IT10	IT10
IT5	IT5
Itarget1	Itarget1
Itarget4	Itarget4
ItargetE1	ItargetE1
ItargetE4	ItargetE4
ITe10	ITe10
ITe5	ITe5
ITM	ITM
joinMSE	joinMSE
Jplot	Jplot
Kplot	Kplot
L2A	L2A
L95target	L95target
label.class-class	label.class-class
LBSPR	LBSPR
LBSPR_ItEff	LBSPR_ItEff
LBSPR_ItSel	LBSPR_ItSel
LBSPR_ItTAC	LBSPR_ItTAC
LinInterp	LinInterp
load.iscam.files	load.iscam.files
Low_Effort_Non_Target	Low_Effort_Non_Target
Lratio_BHI	Lratio_BHI
Lratio_BHI2	Lratio_BHI2
LSRA	LSRA
LSRA2	LSRA2
LSRA_MCMC_sim	LSRA_MCMC_sim
LSRA_opt	LSRA_opt
LSRA_opt_cpp	LSRA_opt_cpp
LstepCC1	LstepCC1
LstepCC4	LstepCC4
LstepCE1	LstepCE1
LstepCE2	LstepCE2
Ltarget1	Ltarget1
Ltarget4	Ltarget4
LtargetE1	LtargetE1
LtargetE4	LtargetE4
LTY	LTY
Mackerel	Mackerel
makePerf	makePerf
makeTransparent	makeTransparent
matlenlim	matlenlim
matlenlim2	matlenlim2
MCD	MCD
MCD4010	MCD4010
mconv	mconv
minlenLopt1	minlenLopt1
ML2D	ML2D
movdistil	movdistil
movfit	movfit
movfit_Rcpp	movfit_Rcpp
MPclass	MPclass
MPStats	MPStats
MRnoreal	MRnoreal
MRreal	MRreal
MSE-class	MSE-class
NAor0	NAor0
Needed	Needed
negcorlogspace	negcorlogspace
NFref	NFref
NOAA_plot	NOAA_plot
Obs-class	Obs-class
ObsDescription	ObsDescription
OM-class	OM-class
OMDescription	OMDescription
OMdoc	OMdoc
OMexample	OMexample
OMinit	OMinit
OM_xl	OM_xl
OneRep	OneRep
optBH	optBH
optMSY	optMSY
optQ	optQ
optQ_cpp	optQ_cpp
ourReefFish	ourReefFish
Overages	Overages
P10	P10
P100	P100
P50	P50
Perfect_Imp	Perfect_Imp
Perfect_Info	Perfect_Info
plot,Data,ANY-method	plot-Data
plot,MSE,ANY-method	plot-MSE
plot.OM	plot-OM
plotFleet	plot-Fleet
plotFun	plotFun
plotImp	plot-Imp
plotM	plotM
plotObs	plot-Obs
plotOFL	plotOFL
plotSelect	plotSelect
plotStock	plotStock
PMobj-class	PMobj-class
POF	POF
popdyn	popdyn
popdynCPP	popdynCPP
popdynOneTS	popdynOneTS
popdynOneTScpp	popdynOneTScpp
Porgy	Porgy
Pplot	Pplot
Pplot2	Pplot2
Precise_Biased	Precise_Biased
Precise_Unbiased	Precise_Unbiased
prob.class-class	prob.class-class
projOpt_cpp	projOpt_cpp
PWhisker	PWhisker
Range	Range
range01	Range
Rcontrol	Rcontrol
Rcontrol2	Rcontrol2
read.control.file	read.control.file
read.data.file	read.data.file
read.mcmc	read.mcmc
read.par.file	read.par.file
read.projection.file	read.projection.file
read.report.file	read.report.file
Red_snapper	Red_snapper
Replace	Replace
replic8	replic8
Required	Required
Rockfish	Rockfish
runInMP	runInMP
runMSE	runMSE
runMSEnomsg	runMSEnomsg
runMSErobust	runMSErobust
Sam	Sam
SampleCpars	SampleCpars
SampleFleetPars	SampleFleetPars
SampleImpPars	SampleImpPars
SampleObsPars	SampleObsPars
SampleStockPars	SampleStockPars
sample_steepness2	sample_steepness2
sampy	sampy
SBT1	SBT1
SBT2	SBT2
sdconv	sdconv
Sense	Sense
setup	setup
show,PMobj-method	show-MSE
Simulation_1	Simulation_1
simYears	simYears
SketchFun	SketchFun
slotlim	slotlim
Snapper	Snapper
Sole	Sole
Splot	Splot
SPmod	SPmod
SPMSY	SPMSY
SPslope	SPslope
SPSRA	SPSRA
SPSRA_ML	SPSRA_ML
SRAcomp	SRAcomp
SRAsim	SRAsim
SRopt	SRopt
SS2Data	SS2Data
SS2DLM	SS2DLM
StochasticSRA	StochasticSRA
StochasticSRAcpp	StochasticSRAcpp
Stock-class	Stock-class
StockDescription	StockDescription
STY	STY
Sub	Sub
SubCpars	SubCpars
SubOM	SubOM
summary,Data-method	summary-Data
summary,MSE-method	summary-MSE
TAC	TAC
TACfilter	TACfilter
Targeting_Small_Fish	Targeting_Small_Fish
Target_All_Fish	Target_All_Fish
tdlnorm	tdlnorm
testOM	testOM
Toothfish	Toothfish
Tplot	Tplot
Tplot2	Tplot2
Tplot3	Tplot3
TradePlot	TradePlot
trlnorm	trlnorm
updateMSE	updateMSE
userguide	userguide
validcpars	validcpars
VOI	VOI
VOI2	VOI2
VOIplot	VOIplot
wormplot	wormplot
writeCSV	writeCSV
XL2OM	XL2OM
Yield	Yield
YPR	YPR
YPR_CC	YPR_CC
YPR_ML	YPR_ML
