# Interactive Plotting of Three-Way Differential Expression Analysis

## Documentation for package ‘volcano3D’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

boxplot_trio | Boxplot to compare groups
grid-class | An S4 class to define the polar grid coordinates system.
polar-class | An S4 class to define the polar coordinates and pvalues for polar differential expression plots
polar_coords | Coordinates for Three Way Polar Plot
polar_grid | Grid required for 3D volcano plot and 2D radial plots
radial_ggplot | 'Ggplot' for Three Way Polar Plot
radial_plotly | Three-way radial comparison Polar Plot (using plotly)
show_grid | Plots grid objects for inspection using plotly
significance_subset | Extract a subset population
syn_example_meta | PEAC synovial sample data
syn_example_p | Synovial differential expression of genes across pathotypes in PEAC cohort
syn_example_rld | PEAC synovial gene expression data
volcano3D | Three-Dimensional Volcano Plot
volcano_plot | Creates a single volcano plot
volcano_trio | Volcano Plots for a three-way comparison