# Lining Up Two Sets of Measurements

## Documentation for package ‘lineup’ version 0.38-3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

calc.locallod | Calculate LOD score at physical position of each gene
combinedist | Combine distance matrices into a single such
corbetw2mat | Calculate correlations between columns of two matrices
distee | Calculate distance between two gene expression data sets
disteg | Calculate distance between two gene expression data sets
expr-data | Example gene expression data
expr1 | Example gene expression data
expr2 | Example gene expression data
f2cross | Example experimental cross data
find.gene.pseudomarker | Find nearest peudomarker to each gene
findCommonID | Find individuals in common between a cross and a phenotype matrix
fscale | Standardize the columns of a matrix
genepos | Genomic positions of genes in simulated expression data
lineupversion | Installed version of R/lineup
omitdiag | Replace the diagonal in a distance matrix with missing values
plot.lineupdist | Plot summary of inter-individual distances
plot2dist | Plot two sets of inter-individual distances against one another
plotEGclass | Plot classifier of eQTL genotype from expression data
pmap | Physical map of markers
pulldiag | Pull out the diagonal from a distance matrix
subset.lineupdist | Subsetting distance matrix
summary.lineupdist | Summarize inter-individual distances
[.lineupdist | Subsetting distance matrix