# Genome-Wide Structural Equation Modeling

## Documentation for package ‘gwsem’ version 2.0.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

gwsem-package | Genome-wide Structural Equation Modeling
buildItem | Build a model suitable for a single item genome-wide association study
buildOneFac | Build a model suitable for a single factor genome-wide association study
buildOneFacRes | Build a model suitable for a single factor residual genome-wide association study
buildOneItem | Build a model suitable for a single item genome-wide association study
buildTwoFac | Build a model suitable for a two factor genome-wide association study
GWAS | Run a genome-wide association study (GWAS) using the provided model
gwsem | Genome-wide Structural Equation Modeling
isSuspicious | Determine which results are suspicious
loadResults | Load GWAS results into a single data.frame
loadSuspicious | Load suspicious GWAS results into a single data.frame
plot.gwsemResult | Creates a Manhattan plot
prepareComputePlan | Return a suitable compute plan for a genome-wide association study
setupExogenousCovariates | Set up exogenous model covariates
setupThresholds | Set up thresholds for ordinal indicators