# Miscellaneous Extensions to 'ggplot2'

## Documentation for package ‘ggpmisc’ version 0.3.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

ggpmisc-package | ggpmisc: Miscellaneous Extensions to 'ggplot2'
annotate | Annotations supporting NPC
append_layers | Moved to package 'gginnards'
bottom_layer | Moved to package 'gginnards'
delete_layers | Moved to package 'gginnards'
extract_layers | Moved to package 'gginnards'
geom_debug | Moved to package 'gginnards'
geom_grob | Inset graphical objects
geom_grob_npc | Inset graphical objects
geom_label_npc | Text with Normalised Parent Coordinates
geom_linked_text | Linked Text
geom_null | Moved to package 'gginnards'
geom_plot | Inset plots
geom_plot_npc | Inset plots
geom_quadrant_lines | Reference lines: horizontal plus vertical, and quadrants
geom_table | Inset tables
geom_table_npc | Inset tables
geom_text_npc | Text with Normalised Parent Coordinates
geom_vhlines | Reference lines: horizontal plus vertical, and quadrants
geom_x_margin_arrow | Reference arrows on the margins
geom_x_margin_grob | Add Grobs on the margins
geom_x_margin_point | Reference points on the margins
geom_y_margin_arrow | Reference arrows on the margins
geom_y_margin_grob | Add Grobs on the margins
geom_y_margin_point | Reference points on the margins
ggplot | Create a new ggplot plot from time series data
ggplot.ts | Create a new ggplot plot from time series data
ggplot.xts | Create a new ggplot plot from time series data
ggpmisc | ggpmisc: Miscellaneous Extensions to 'ggplot2'
Moved | Moved to package 'gginnards'
move_layers | Moved to package 'gginnards'
num_layers | Moved to package 'gginnards'
outcome2factor | Convert numeric ternary outcomes into a factor
position_nudge_center | Nudge labels away from a central point
position_nudge_centre | Nudge labels away from a central point
position_nudge_keep | Nudge labels away from a central point
position_nudge_line | Nudge labels away from a line
position_nudge_to | Nudge labels to new positions
quadrant_example.df | Example gene expression data
scale_color_outcome | Colour and fill scales for ternary outcomes
scale_colour_outcome | Colour and fill scales for ternary outcomes
scale_continuous_npc | Position scales for continuous data (npcx & npcy)
scale_fill_outcome | Colour and fill scales for ternary outcomes
scale_npcx_continuous | Position scales for continuous data (npcx & npcy)
scale_npcy_continuous | Position scales for continuous data (npcx & npcy)
scale_shape_outcome | Shape scale for ternary outcomes
scale_x_FDR | Covenience scale for P-values
scale_x_logFC | Position scales for log fold change data
scale_x_Pvalue | Covenience scale for P-values
scale_y_FDR | Covenience scale for P-values
scale_y_logFC | Position scales for log fold change data
scale_y_Pvalue | Covenience scale for P-values
shift_layers | Moved to package 'gginnards'
stat_apply_group | Apply a function to x or y values
stat_apply_panel | Apply a function to x or y values
stat_centroid | Apply a function to x or y values
stat_debug_group | Moved to package 'gginnards'
stat_debug_panel | Moved to package 'gginnards'
stat_dens1d_filter | Filter observations by local 1D density
stat_dens1d_filter_g | Filter observations by local 1D density
stat_dens1d_labels | Replace labels in data based on 1D density
stat_dens2d_filter | Filter observations by local 2D density
stat_dens2d_filter_g | Filter observations by local 2D density
stat_dens2d_labels | Replace labels in data based on 2D density
stat_fit_augment | Augment data with fitted values and statistics
stat_fit_deviations | Residuals from model fit as segments
stat_fit_glance | One row summary data frame for a fitted model
stat_fit_residuals | Residuals from a model fit
stat_fit_tb | Model-fit summary or ANOVA
stat_fit_tidy | One row data frame with fitted parameter estimates
stat_fmt_tb | Select and slice a tibble nested in 'data'
stat_peaks | Local maxima (peaks) or minima (valleys)
stat_poly_eq | Equation, p-value, R^2, AIC or BIC of fitted polynomial
stat_quadrant_counts | Number of observations in quadrants
stat_summary_xy | Apply a function to x or y values
stat_valleys | Local maxima (peaks) or minima (valleys)
symmetric_limits | Expand a range to make it symmetric
threshold2factor | Convert numeric ternary outcomes into a factor
top_layer | Moved to package 'gginnards'
try_data_frame | Convert an R object into a tibble
try_tibble | Convert an R object into a tibble
ttheme_gtbw | Table themes
ttheme_gtdark | Table themes
ttheme_gtdefault | Table themes
ttheme_gtlight | Table themes
ttheme_gtminimal | Table themes
ttheme_gtplain | Table themes
ttheme_gtsimple | Table themes
ttheme_gtstripes | Table themes
ttheme_set | Set default table theme
volcano_example.df | Example gene expression data
which_layers | Moved to package 'gginnards'
xy_outcomes2factor | Convert two numeric ternary outcomes into a factor
xy_thresholds2factor | Convert two numeric ternary outcomes into a factor