# Bibliography

### Comprehensive list of references cited in the package

#### N. Frerebeau

#### 2020-03-19

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———. 2006b. “Statistical Aspects of Pottery Quantification for the Dating of Some Archaeological Contexts.” Archaeometry 48 (1): 169–83. https://doi.org/10.1111/j.1475-4754.2006.00249.x.

Bellanger, Lise, and Philippe Husi. 2012. “Statistical Tool for Dating and Interpreting Archaeological Contexts Using Pottery.” Journal of Archaeological Science 39 (4): 777–90. https://doi.org/10.1016/j.jas.2011.06.031.

Bellanger, L., R. Tomassone, and P. Husi. 2008. “A Statistical Approach for Dating Archaeological Contexts.” Journal of Data Science 6: 135–54.

Berger, W. H., and F. L. Parker. 1970. “Diversity of Planktonic Foraminifera in Deep Sea Sediments.” Science 168 (3937): 1345–7. https://doi.org/10.1126/science.168.3937.1345.

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Bobrowsky, Peter, T., and Bruce F. Ball. 1989. “The Theory and Mechanics of Ecological Diversity in Archaeology.” In Quantifying Diversity in Archaeology, edited by Robert D. Leonard and George T. Jones, 4–12. New Directions in Archaeology. Cambridge: Cambridge University Press.

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Brainerd, George W. 1951. “The Place of Chronological Ordering in Archaeological Analysis.” American Antiquity 16 (04): 301–13. https://doi.org/10.2307/276979.

Bray, J. Roger, and J. T. Curtis. 1957. “An Ordination of the Upland Forest Communities of Southern Wisconsin.” Ecological Monographs 27 (4): 325–49. https://doi.org/10.2307/1942268.

Brillouin, Leon. 1956. Science and Information Theory. New York: Academic Press.

Chao, Anne. 1984. “Nonparametric Estimation of the Number of Classes in a Population.” Scandinavian Journal of Statistics 11 (4): 265–70.

———. 1987. “Estimating the Population Size for Capture Recapture Data with Unequal Catchability.” Biometrics 43 (4): 783–91. https://doi.org/10.2307/2531532.

Chao, Anne, and Chun-Huo Chiu. 2016. “Species Richness: Estimation and Comparison.” In Wiley StatsRef: Statistics Reference Online, edited by N. Balakrishnan, Theodore Colton, Brian Everitt, Walter Piegorsch, Fabrizio Ruggeri, and Jozef L. Teugels, 1–26. Chichester, UK: John Wiley & Sons, Ltd. https://doi.org/10.1002/9781118445112.stat03432.pub2.

Chao, Anne, and Shen-Ming Lee. 1992. “Estimating the Number of Classes via Sample Coverage.” Journal of the American Statistical Association 87 (417): 210–17. https://doi.org/10.1080/01621459.1992.10475194.

Chiu, Chun-Huo, Yi-Ting Wang, Bruno A. Walther, and Anne Chao. 2014. “An Improved Nonparametric Lower Bound of Species Richness via a Modified Good-Turing Frequency Formula.” Biometrics 70 (3): 671–82. https://doi.org/10.1111/biom.12200.

Cody, M. L. 1975. “Towards a Theory of Continental Species Diversity: Bird Distributions over Mediterranean Habitat Gradients.” In Ecology and Evolution of Communities, edited by M. L. Cody and J. M. Diamond, 214–57. Cambridge, MA: Harvard University Press.

Colman, Steven M., Kenneth L. Pierce, and Peter W. Birkeland. 1987. “Suggested Terminology for Quaternary Dating Methods.” Quaternary Research 28 (2): 314–19. https://doi.org/10.1016/0033-5894(87)90070-6.

Crema, Enrico R., Anne Kandler, and Stephen Shennan. 2016. “Revealing Patterns of Cultural Transmission from Frequency Data: Equilibrium and Non-Equilibrium Assumptions.” Scientific Reports 6 (1). https://doi.org/10.1038/srep39122.

Dean, Jeffrey S. 1978. “Independent Dating in Archaeological Analysis.” In Advances in Archaeological Method and Theory, 223–55. Elsevier. https://doi.org/10.1016/B978-0-12-003101-6.50013-5.

Desachy, Bruno. 2004. “Le sériographe EPPM: un outil informatisé de sériation graphique pour tableaux de comptages.” Revue archéologique de Picardie 3 (1): 39–56. https://doi.org/10.3406/pica.2004.2396.

Dunnell, Robert C. 1970. “Seriation Method and Its Evaluation.” American Antiquity 35 (03): 305–19. https://doi.org/10.2307/278341.

Dye, Thomas S. 2016. “Long-Term Rhythms in the Development of Hawaiian Social Stratification.” Journal of Archaeological Science 71 (July): 1–9. https://doi.org/10.1016/j.jas.2016.05.006.

Eren, Metin I., Anne Chao, Wen-Han Hwang, and Robert K. Colwell. 2012. “Estimating the Richness of a Population When the Maximum Number of Classes Is Fixed: A Nonparametric Solution to an Archaeological Problem.” Edited by Alex Mesoudi. PLoS ONE 7 (5): e34179. https://doi.org/10.1371/journal.pone.0034179.

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family=Velden, prefix=vande, given=M., P. J. F. Groenen, and J. Poblome. 2009. “Seriation by Constrained Correspondence Analysis: A Simulation Study.” Computational Statistics & Data Analysis 53 (8): 3129–38. https://doi.org/10.1016/j.csda.2008.08.020.

Feder, Alison F., Sergey Kryazhimskiy, and Joshua B. Plotkin. 2014. “Identifying Signatures of Selection in Genetic Time Series.” Genetics 196 (2): 509–22. https://doi.org/10.1534/genetics.113.158220.

Fisher, R. A., A. Steven Corbet, and C. B. Williams. 1943. “The Relation Between the Number of Species and the Number of Individuals in a Random Sample of an Animal Population.” The Journal of Animal Ecology 12 (1): 42. https://doi.org/10.2307/1411.

Ford, J. A. 1962. A Quantitative Method for Deriving Cultural Chronology. Technical Manual 1. Washington, DC: Pan American Union.

Frerebeau, Nicolas. 2019. “Tabula: An R Package for Analysis, Seriation, and Visualization of Archaeological Count Data.” Journal of Open Source Software 4 (44): 1821. https://doi.org/10.21105/joss.01821.

Gleason, Henry Allan. 1922. “On the Relation Between Species and Area.” Ecology 3 (2): 158–62. https://doi.org/10.2307/1929150.

Gotelli, Nicholas J., and Robert K. Colwell. 2011. “Estimating Species Richness.” In Biological Diversity: Frontiers in Measurement and Assessment, edited by Anne E. Magurran and Brian J. McGill, 39–54. Oxford: Oxford University Press.

Hurlbert, Stuart H. 1971. “The Nonconcept of Species Diversity: A Critique and Alternative Parameters.” Ecology 52 (4): 577–86. https://doi.org/10.2307/1934145.

Hutcheson, K. 1970. “A Test for Comparing Diversity Based on the Shannon Formula.” Journal of Theoretical Biology 29 (1): 151–54. https://doi.org/10.1016/0022-5193(70)90124-4.

Ihm, Peter. 2005. “A Contribution to the History of Seriation in Archaeology.” In Classification the Ubiquitous Challenge, edited by Claus Weihs and Wolfgang Gaul, 307–16. Berlin Heidelberg: Springer. https://doi.org/10.1007/3-540-28084-7_34.

Kilburn, Paul D. 1966. “Analysis of the Species-Area Relation.” Ecology 47 (5): 831–43. https://doi.org/10.2307/1934269.

Kintigh, Keith. 2006. “Ceramic Dating and Type Associations.” In Managing Archaeological Data: Essays in Honor of Sylvia W. Gaines, edited by Jeffrey Hantman and Rachel Most, 17–26. Anthropological Research Paper 57. Tempe, AZ: Arizona State University. https://doi.org/10.6067/XCV8J38QSS.

Kintigh, Keith W. 1984. “Measuring Archaeological Diversity by Comparison with Simulated Assemblages.” American Antiquity 49 (1): 44–54. https://doi.org/10.2307/280511.

———. 1989. “Sample Size, Significance, and Measures of Diversity.” In Quantifying Diversity in Archaeology, edited by Robert D. Leonard and George T. Jones, 25–36. New Directions in Archaeology. Cambridge: Cambridge University Press.

Laxton, R.R. 1978. “The Measure of Diversity.” Journal of Theoretical Biology 70 (1): 51–67. https://doi.org/10.1016/0022-5193(78)90302-8.

Leonard, Robert D., and George T. Jones, eds. 1989. Quantifying Diversity in Archaeology. New Directions in Archaeology. Cambridge: Cambridge University Press.

Lipo, Carl P., Mark E. Madsen, and Robert C. Dunnell. 2015. “A Theoretically-Sufficient and Computationally-Practical Technique for Deterministic Frequency Seriation.” Edited by Nuno Bicho. PLOS ONE 10 (4): e0124942. https://doi.org/10.1371/journal.pone.0124942.

Macarthur, Robert H. 1965. “Patterns of Species Diversity.” Biological Reviews 40 (4): 510–33. https://doi.org/10.1111/j.1469-185X.1965.tb00815.x.

Magurran, Anne E. 1988. Ecological Diversity and Its Measurement. Princeton, NJ: Princeton University Press.

Magurran, Anne E., and Brian J. McGill, eds. 2011. Biological Diversity: Frontiers in Measurement and Assessment. Oxford: Oxford University Press.

Margalef, R. 1958. “Information Theory in Ecology.” General Systems 3: 36–71.

McIntosh, Robert P. 1967. “An Index of Diversity and the Relation of Certain Concepts to Diversity.” Ecology 48 (3): 392–404. https://doi.org/10.2307/1932674.

Menhinick, Edward F. 1964. “A Comparison of Some Species-Individuals Diversity Indices Applied to Samples of Field Insects.” Ecology 45 (4): 859–61. https://doi.org/10.2307/1934933.

O’Brien, Michael J, and R. Lee Lyman. 2002. Seriation, Stratigraphy, and Index Fossils: The Backbone of Archaeological Dating. Dordrecht: Springer.

Odum, H. T., J. E. Cantlon, and L. S. Kornicker. 1960. “An Organizational Hierarchy Postulate for the Interpretation of Species-Individual Distributions, Species Entropy, Ecosystem Evolution, and the Meaning of a Species-Variety Index.” Ecology 41 (2): 395–95. https://doi.org/10.2307/1930248.

Peeples, Matthew A., and Gregson Schachner. 2012. “Refining Correspondence Analysis-Based Ceramic Seriation of Regional Data Sets.” Journal of Archaeological Science 39 (8): 2818–27. https://doi.org/10.1016/j.jas.2012.04.040.

Peet, R. K. 1974. “The Measurement of Species Diversity.” Annual Review of Ecology and Systematics 5 (1): 285–307. https://doi.org/10.1146/annurev.es.05.110174.001441.

Petrie, W. M. F. 1899. “Sequences in Prehistoric Remains.” The Journal of the Anthropological Institute of Great Britain and Ireland 29 (3/4): 295–301. https://doi.org/10.2307/2843012.

Philippe, A, and M.-A. Vibet. 2017. “Analysis of Archaeological Phases Using the CRAN Package Archaeophases.” Nantes. https://hal.archives-ouvertes.fr/hal-01347895v3.

Pielou, E. C. 1975. Ecological Diversity. New York: Wiley.

Poblome, J., and P. J. F. Groenen. 2003. “Constrained Correspondence Analysis for Seriation of Sagalassos Tablewares.” In The Digital Heritage of Archaeology, edited by M. Doerr and A. Sarris. Hellenic Ministry of Culture.

Porčić, M. 2013. “The Goodness of Fit and Statistical Significance of Seriation Solutions.” Journal of Archaeological Science 40 (12): 4552–9. https://doi.org/10.1016/j.jas.2013.07.013.

Preston, F. W. 1948. “The Commonness, and Rarity, of Species.” Ecology 29 (3): 254–83. https://doi.org/10.2307/1930989.

———. 1962a. “The Canonical Distribution of Commonness and Rarity: Part I.” Ecology 43 (2): 185. https://doi.org/10.2307/1931976.

———. 1962b. “The Canonical Distribution of Commonness and Rarity: Part Ii.” Ecology 43 (3): 410–32. https://doi.org/10.2307/1933371.

Robinson, W. S. 1951. “A Method for Chronologically Ordering Archaeological Deposits.” American Antiquity 16 (04): 293–301. https://doi.org/10.2307/276978.

Routledge, R. D. 1977. “On Whittaker’s Components of Diversity.” Ecology 58 (5): 1120–7. https://doi.org/10.2307/1936932.

Sander, Howard L. 1968. “Marine Benthic Diversity: A Comparative Study.” The American Naturalist 102 (925): 243–82. https://www.jstor.org/stable/2459027.

Shannon, C. E. 1948. “A Mathematical Theory of Communication.” The Bell System Technical Journal 27: 379–423. https://doi.org/10.1002/j.1538-7305.1948.tb01338.x.

Simpson, E. H. 1949. “Measurement of Diversity.” Nature 163 (4148): 688–88. https://doi.org/10.1038/163688a0.

South, S. A. 1977. Method and Theory in Historical Archaeology. Studies in Archeology. New York: Academic Press.

Whittaker, R. H. 1960. “Vegetation of the Siskiyou Mountains, Oregon and California.” Ecological Monographs 30 (3): 279–338. https://doi.org/10.2307/1943563.

Wilson, M. V., and A. Shmida. 1984. “Measuring Beta Diversity with Presence-Absence Data.” The Journal of Ecology 72 (3): 1055–64. https://doi.org/10.2307/2259551.