add.confounder.variables	add.confounder.variables
assess.cluster.similarity	assess.cluster.similarity
cell.cycle.score	cell.cycle.score
cluster.analysis	cluster.analysis
controlled.mean.score	controlled.mean.score
download_LCMV	download_LCMV
filter_cluster_data	filter_cluster_data
find_neighbors	find_neighbors
get.cluster.names	get.cluster.names
get.robust.cluster.similarity	get.robust.cluster.similarity
get.robust.markers	get.robust.markers
get.variable.genes	get.variable.genes
initialize.project	initialize.project
mitochondrial.score	mitochondrial.score
PCA	PCA
plot_contour_overlay_tSNE	plot_contour_overlay_tSNE
plot_pair_scatter	plot_pair_scatter
plot_PCA	plot_PCA
plot_simple_heatmap	plot_simple_heatmap
read.data	read.data
read.preclustered.datasets	read.preclustered.datasets
read_10x_data	read_10x_data
ribosomal.score	ribosomal.score
Rphenograph	Rphenograph
run_tSNE	run_tSNE
set.cluster.names	get.cluster.names
setup_LCMV_example	setup_LCMV_example
setup_pooled_env	setup_pooled_env
summarize	summarize
visualize.cluster.cors.heatmaps	visualize.cluster.cors.heatmaps
visualize.cluster.similarity.stats	visualize.cluster.similarity.stats
