apply.term.filters	apply.term.filters
calibrate.sizes	calibrate.sizes
clean.terms	clean.terms
exclude.branch	exclude.branch
get.ancestors	get.ancestors
get.case.based.colours	get.case.based.colours
get.case.based.labels	get.case.based.labels
get.case.term.matrix	get.case.term.matrix
get.code.node.labels	get.code.node.labels
get.descendants	get.descendants
get.frequency.based.colours	get.frequency.based.colours
get.frequency.based.labels	get.frequency.based.labels
get.frequency.based.sizes	get.frequency.based.sizes
get.full.labels	get.full.labels
get.hpo.graph	get.hpo.graph
get.informative.node.labels	get.informative.node.labels
get.mpo.to.hpo	get.mpo.to.hpo
get.node.friendly.long.names	get.node.friendly.long.names
get.ontology	get.ontology
get.pop.frequency.based.colours	get.pop.frequency.based.colours
get.shortened.names	get.shortened.names
get.significance.based.sizes	get.significance.based.sizes
get.simple.node.labels	get.simple.node.labels
get.term.adjacency.matrix	get.term.adjacency.matrix
get.term.descendancy.matrix	get.term.descendancy.matrix
get.term.frequencies	get.term.frequencies
get.term.info.content	get.term.info.content
get.term.pseudo.adjacency.matrix	get.term.pseudo.adjacency.matrix
hpo.plot	hpo.plot
hpo.terms	hpo.terms
intersection.with.branches	intersection.with.branches
mpo.terms	mpo.terms
mpo.to.hpo	mpo.to.hpo
n.most.frequent.terms	n.most.frequent.terms
p.values.for.occurrence.of.term.in.group	p.values.for.occurrence.of.term.in.group
prune.branch	prune.branch
remove.links	remove.links
remove.non.pa.terms	remove.non.pa.terms
remove.terms.with.less.than.n.occurrences	remove.terms.with.less.than.n.occurrences
remove.uninformative.for.plot	remove.uninformative.for.plot
remove.uninformative.terms	remove.uninformative.terms
setDimNames	setDimNames
simpleCap	simpleCap
swap.out.alt.ids	swap.out.alt.ids
term.set.list.from.character	term.set.list.from.character
