admixturegraph-package	admixturegraph-package
add_an_admixture	add_an_admixture
add_an_admixture2	add_an_admixture2
add_a_leaf	add_a_leaf
add_graph_f4	add_graph_f4
add_graph_f4_sign	add_graph_f4_sign
admixture_edge	admixture_edge
admixture_proportions	admixture_proportions
admix_props	admix_props
agraph	agraph
agraph_children	agraph_children
agraph_parents	agraph_parents
agraph_weights	agraph_weights
all_graphs	all_graphs
all_paths	all_paths
all_path_overlaps	all_path_overlaps
bears	bears
build_edge_optimisation_matrix	build_edge_optimisation_matrix
burn_in	burn_in
calculate_concentration	calculate_concentration
canonise_expression	canonise_expression
canonise_graph	canonise_graph
coef.agraph_fit	coef.agraph_fit
cost_function	cost_function
edge	edge
edge_optimisation_function	edge_optimisation_function
eight_leaves_trees	eight_leaves_trees
evaluate_f4	evaluate_f4
examine_edge_optimisation_matrix	examine_edge_optimisation_matrix
extract_admixture_proportion_parameters	extract_admixture_proportion_parameters
extract_graph_parameters	extract_graph_parameters
extract_trees	extract_trees
f2	f2
f3	f3
f4	f4
f4stats	f4stats
fast_fit	fast_fit
fast_plot	fast_plot
filter_on_leaves	filter_on_leaves
fitted.agraph_fit	fitted.agraph_fit
fit_graph	fit_graph
fit_graph_list	fit_graph_list
fit_permutations_and_graphs	fit_permutations_and_graphs
five_leaves_graphs	five_leaves_graphs
format_path	format_path
four_leaves_graphs	four_leaves_graphs
get_graph_f4_sign	get_graph_f4_sign
graphs_2_0	graphs_2_0
graphs_3_0	graphs_3_0
graphs_3_1	graphs_3_1
graphs_4_0	graphs_4_0
graphs_4_1	graphs_4_1
graphs_4_2	graphs_4_2
graphs_5_0	graphs_5_0
graphs_5_1	graphs_5_1
graphs_5_2	graphs_5_2
graphs_6_0	graphs_6_0
graphs_6_1	graphs_6_1
graphs_6_2	graphs_6_2
graphs_7_0	graphs_7_0
graphs_7_1	graphs_7_1
graphs_8_0	graphs_8_0
graph_environment	graph_environment
graph_to_vector	graph_to_vector
is_descendant_of	is_descendant_of
is_negative	is_negative
is_positive	is_positive
is_unknown	is_unknown
is_zero	is_zero
log_likelihood	log_likelihood
log_sum_of_logs	log_sum_of_logs
make_an_outgroup	make_an_outgroup
make_mcmc_model	make_mcmc_model
make_permutations	make_permutations
model_bayes_factor_n	model_bayes_factor_n
model_likelihood	model_likelihood
model_likelihood_n	model_likelihood_n
mynonneg	mynonneg
no_admixture_events	no_admixture_events
no_admixture_events.agraph	no_admixture_events.agraph
no_admixture_events.agraph_fit	no_admixture_events.agraph_fit
no_admixture_events.agraph_fit_list	no_admixture_events.agraph_fit_list
no_poor_fits	no_poor_fits
no_poor_fits.agraph_fit	no_poor_fits.agraph_fit
no_poor_fits.agraph_fit_list	no_poor_fits.agraph_fit_list
overlaps_sign	overlaps_sign
parent_edges	parent_edges
path_overlap	path_overlap
plot.agraph	plot.agraph
plot.agraph_fit	plot.agraph_fit
plot.f4stats	plot.f4stats
plot_fit_1	plot_fit_1
plot_fit_2	plot_fit_2
poor_fits	poor_fits
poor_fits.agraph_fit	poor_fits.agraph_fit
poor_fits.agraph_fit_list	poor_fits.agraph_fit_list
print.agraph_fit	print.agraph_fit
project_to_population	project_to_population
remove_duplicates	remove_duplicates
rename_nodes	rename_nodes
residuals.agraph_fit	residuals.agraph_fit
run_metropolis_hasting	run_metropolis_hasting
seven_leaves_graphs	seven_leaves_graphs
seven_leaves_trees	seven_leaves_trees
sf2	sf2
sf3	sf3
sf4	sf4
six_leaves_graphs	six_leaves_graphs
split_population	split_population
split_population.agraph_fit	split_population.agraph_fit
split_population.data.frame	split_population.data.frame
summary.agraph_fit	summary.agraph_fit
sum_of_squared_errors	sum_of_squared_errors
sum_of_squared_errors.agraph_fit	sum_of_squared_errors.agraph_fit
sum_of_squared_errors.agraph_fit_list	sum_of_squared_errors.agraph_fit_list
thinning	thinning
vector_to_graph	vector_to_graph
