# CHANGES IN REndo 2.3.1
* None. Version bump in order to resubmit to CRAN after package was archived.


# CHANGES IN REndo 2.3.0

## SIGNIFICANT USER-VISIBLE CHANGES
* Add support for predictions through method `predict` for every model

## BUG FIXES
* Fix wrong calculations for the fitted values and residuals in the enhanced OLS cases of `copulaCorrection`
* Improved documentation



# CHANGES IN REndo 2.2.1

## SIGNIFICANT USER-VISIBLE CHANGES
* To tweak the lmer model fit in `multilevelIV` to their linking, users can supply a parameter `lmer.control`

## NEW FEATURES
* Warning in `confint` if there are NAs in the bootstrapped estimates for `copulaCorrection`
* Updated vignette

## BUG FIXES
* The coefficient estimates for `multilevelIV` are more consistent and independent of data sorting due to different standard settings for fitting `lmer`
* Bootstrapped parameter estimates for `copualCorrection` result in fewer NAs when using L-BFGS-B as optimization method



# CHANGES IN REndo 2.2.0

## SIGNIFICANT USER-VISIBLE CHANGES
* The augmented OLS method in `copulaCorrection` also bootstraps parameter estimates
* The summary output for results from `copulaCorrection` was adapted to reflect that standard errors are bootstrapped
* Removed support for the S3 method `labels` because of inconsistent behavior across methods

## NEW FEATURES
* Bootstrapping for `copulaCorrection` case 1 is now considerably faster
* New data was generated for `dataMultilevelIV`

## BUG FIXES
* The sigma matrix in `latentIV` is constructed as in the paper by Ebbes et al. what improves results. Special thanks to Jordan Henderson for investigating and pointing this out!
* In `latentIV`, the parameter for group membership (`theta5`) is now transformed back and reported correctly.
* The vcov matrix for `latentIV` is corrected for the transformation in `theta5`.
* The bootstrapping in `copulaCorrection` case 1 now creates samples of the same length as the original data
* The (percentile) confidence intervals and vcov for results from `copulaCorrection` now rely on bootstraping



# CHANGES IN REndo 2.1.0

## SIGNIFICANT USER-VISIBLE CHANGES
* The reworked method `multilevelIV` and accompanying data was added back to the package
* Vignette `REndo-introduction` was added to showcase package usage
* Users can supply a parameter `optimx.args` to tweak the LL optimization to their liking

## NEW FEATURES
* Method `confint` was added for methods `latentIV` and `copulaCorrection`
* Examples and documentation were improved for all methods
* New data was generated for `dataHetIV`
* The default number of iterations for all optimizations was increased to 100'000

## BUG FIXES
* To avoid infrequent warnings, the parameter `sigma` used in `copulaCorrection` was constrained to > 0
* Various spelling mistakes were fixed



# CHANGES IN REndo 2.0.0

## SIGNIFICANT USER-VISIBLE CHANGES
* Remodeled all methods' user-interface
* Added detailed input checks for every provided parameter
* Adapted all visible outputs
* Parameter `verbose` allows to turn on or off printing
* Updated documentation to reflect all changes and added theoretical background

## NEW FEATURES
* Formulas support transformations
* Improve all code to be more reliable and stable
* Provide new example datasets and accompanying documentation for all methods
* Added extensive testing for all aspects of the package
* Increased numerical stability for log-likelihood optimization methods `latentIV` and `copualCorrection`

## BUG FIXES
* Many

# DEPRECATED AND DEFUNCT
* The multilevel function is temporarily removed from the package due to ongoing work on it
