# R Package for Aqua Culture

## Documentation for package ‘RAC’ version 1.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

Bass_ind_dataloader | Function that loads forcings data for Seabass individual bioenergetic model and performs the interpolation
Bass_ind_equations | Seabass bioenergetic individual model differential equations
Bass_ind_main | Seabass bioenergetic individual model
Bass_ind_post | Seabass bioenergetic individual model postprocessor
Bass_ind_pre | Seabass bioenergetic individual model preprocessor
Bass_ind_RKsolver | Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method
Bass_ind_skeleton | Creates the folders structure for Seabass individual bioenergetic model
Bass_pop_dataloader | Function that loads forcings data for Seabass population model and performs the interpolation
Bass_pop_equations | Seabass bioenergetic population model differential equations
Bass_pop_loop | Function that runs the Monte Carlo simulation for the Seabass population model
Bass_pop_main | Seabass bioenergetic population model
Bass_pop_post | Postprocess the Seabass population bioenergetic model results
Bass_pop_pre | Seabass bioenergetic population model preprocessor
Bass_pop_RKsolver | Solves the Seabass population bioenergetic balance with a 4th order Runge Kutta method
Bass_pop_skeleton | Creates the folders structure for Seabass population model
Bass_spatial_dataloader | Function that loads forcings data for Bass spatialized model and performs the interpolation
Bass_spatial_loop | Bass bioenergetic spatialized model - spatialization loop
Bass_spatial_main | Bass bioenergetic spatialized model - spatialization loop
Bass_spatial_post | Postprocess the Mussel spatialized model results
Bass_spatial_pre | Bass bioenergetic spatialized model preprocessor
Bass_spatial_pre_int | Bass bioenergetic spatialized model preprocessor - used inside spatialization loop
Bass_spatial_RKsolver | Solves the Seabass bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model
Bass_spatial_skeleton | Creates the folders structure for Bass spatialized model
Bream_ind_dataloader | Function that loads forcings data for Seabream individual bioenergetic model and performs the interpolation
Bream_ind_equations | Seabream bioenergetic individual model differential equations
Bream_ind_main | Seabream bioenergetic individual model
Bream_ind_post | Postprocess the Seabream indivual bioenergetic model results
Bream_ind_pre | Seabream bioenergetic individual model preprocessor
Bream_ind_RKsolver | Solves the Seabream individual bioenergetic balance with a 4th order Runge Kutta method
Bream_ind_skeleton | Creates the folders structure for Seabream individual bioenergetic model
Bream_pop_dataloader | Function that loads forcings data for Seabream population model and performs the interpolation
Bream_pop_equations | Seabream bioenergetic population model differential equations
Bream_pop_loop | Function that runs the Monte Carlo simulation for the Seabream population model
Bream_pop_main | Seabream bioenergetic population model
Bream_pop_post | Postprocess the Bream population bioenergetic model results
Bream_pop_pre | Seabream bioenergetic population model preprocessor
Bream_pop_RKsolver | Solves the Seabream population bioenergetic balance with a 4th order Runge Kutta method
Bream_pop_skeleton | Creates the folders structure for Seabream population model
Bream_spatial_dataloader | Function that loads forcings data for Bream spatialized model and performs the interpolation
Bream_spatial_loop | Bream bioenergetic spatialized model - spatialization loop
Bream_spatial_main | Bream bioenergetic spatialized model - spatialization loop
Bream_spatial_post | Postprocess the Bream spatialized model results
Bream_spatial_pre | Bream bioenergetic spatialized model preprocessor
Bream_spatial_pre_int | Bream bioenergetic spatialized model preprocessor - used inside spatialization loop
Bream_spatial_RKsolver | Solves the Seabream bioenergetic balance with a 4th order Runge Kutta method - used in spatialized model
Bream_spatial_skeleton | Creates the folders structure for Bream spatialized model
ClamF_ind_dataloader | Function that loads forcings data for Clam individual bioenergetic model (alternative version) and performs the interpolation
ClamF_ind_equations | Clam bioenergetic individual model differential equations (alternative version)
ClamF_ind_main | Clam bioenergetic individual model (alternative version)
ClamF_ind_post | Postprocess the Clam indivual bioenergetic model (alternative version) results
ClamF_ind_pre | Clam bioenergetic individual model preprocessor (alternativer version)
ClamF_ind_RKsolver | Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method
ClamF_ind_skeleton | Creates the folders structure for Clam individual bioenergetic model (alternative version)
ClamF_pop_dataloader | Function that loads forcings data for Clam population model (alternative version) and performs the interpolation
ClamF_pop_equations | Clam bioenergetic population model differential equations (alternative version)
ClamF_pop_loop | Function that runs the Monte Carlo simulation for the Clam population model (alternative version)
ClamF_pop_main | Clam bioenergetic population model (alternative version)
ClamF_pop_post | Postprocess the Clam population bioenergetic model results (alternative model)
ClamF_pop_pre | Clam bioenergetic population model (alternative version) preprocessor
ClamF_pop_RKsolver | Solves the Clam bioenergetic balance (alternative version) with a 4th order Runge Kutta method
ClamF_pop_skeleton | Creates the folders structure for Clam population model (alternative version)
Clam_ind_dataloader | Function that loads forcings data for Clam individual bioenergetic model and performs the interpolation
Clam_ind_equations | Clam bioenergetic individual model differential equations
Clam_ind_main | Clam bioenergetic individual model
Clam_ind_post | Postprocess the Clam individual bioenergetic model results
Clam_ind_pre | Clam bioenergetic individual model preprocessor
clam_ind_RKsolver | Solves the Clam individual bioenergetic balance with a 4th order Runge Kutta method
Clam_ind_skeleton | Creates the folders structure for Clam individual bioenergetic model
Clam_pop_dataloader | Function that loads forcings data for Clam population model and performs the interpolation
Clam_pop_equations | Clam bioenergetic population model differential equations
Clam_pop_loop | Function that runs the Monte Carlo simulation for the Clam population model
Clam_pop_main | Clam bioenergetic population model
Clam_pop_post | Postprocess the Clam population bioenergetic model results
Clam_pop_pre | Clam bioenergetic population model preprocessor
Clam_pop_RKsolver | Solves the Clam bioenergetic balance for population with a 4th order Runge Kutta method
Clam_pop_skeleton | Creates the folders structure for Clam population model
Mussel_ind_dataloader | Function that loads forcings data for Mussel individual bioenergetic model and performs the interpolation
Mussel_ind_equations | Mussel bioenergetic individual model differential equations
Mussel_ind_main | Mussel bioenergetic individual model
Mussel_ind_post | Postprocess the Mussel indivual bioenergetic model results
Mussel_ind_pre | Mussel bioenergetic individual model preprocessor
Mussel_ind_RKsolver | Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method
Mussel_ind_skeleton | Creates the folders structure for Mussel individual bioenergetic model
Mussel_pop_dataloader | Function that loads forcings data for Mussel population model and performs the interpolation
Mussel_pop_equations | Mussel bioenergetic population model differential equations
Mussel_pop_loop | Function that runs the Monte Carlo simulation for the Mussel population model
Mussel_pop_main | Mussel bioenergetic population model
Mussel_pop_post | Postprocess the Mussel population bioenergetic model results
Mussel_pop_pre | Mussel bioenergetic population model preprocessor
Mussel_pop_RKsolver | Solves the Mussel population bioenergetic balance with a 4th order Runge Kutta method
Mussel_pop_skeleton | Creates the folders structure for Mussel population model
Mussel_spatial_dataloader | Function that loads forcings data for Mussel spatialized model and performs the interpolation
Mussel_spatial_loop | Mussel bioenergetic spatialized model - spatialization loop
Mussel_spatial_main | Mussel bioenergetic spatialized model - spatialization loop
Mussel_spatial_post | Postprocess the Mussel spatialized model results
Mussel_spatial_pre | Mussel bioenergetic spatialized model preprocessor
Mussel_spatial_pre_int | Mussel bioenergetic spatialized model preprocessor - used inside spatialization loop
Mussel_spatial_RKsolver | Solves the Mussel individual bioenergetic balance with a 4th order Runge Kutta method for spatialized model
Mussel_spatial_skeleton | Creates the folders structure for Mussel spatialized model
Pop_fun | Function that solves the population dynamics equations including discontinuities